Results 61 - 67 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10994 | 5' | -54.2 | NC_002794.1 | + | 78867 | 0.66 | 0.980688 |
Target: 5'- cUCUCGGAGcucagccgccUCG-ACCUCcUCGGCCGg -3' miRNA: 3'- aGGAGCCUU----------AGCaUGGAGcGGUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 137545 | 0.66 | 0.980688 |
Target: 5'- gUCUUCGGGcgcgaagaacGUCGcGCCgccgUCGCC-GCCGg -3' miRNA: 3'- -AGGAGCCU----------UAGCaUGG----AGCGGuUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 105800 | 0.66 | 0.982693 |
Target: 5'- gUCUCGGAGaCGgACCgaaaGCgCGACCGg -3' miRNA: 3'- aGGAGCCUUaGCaUGGag--CG-GUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 109545 | 0.66 | 0.982693 |
Target: 5'- gCCgggCGGAccgGUC-UACCUCGCCccCCa -3' miRNA: 3'- aGGa--GCCU---UAGcAUGGAGCGGuuGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 102874 | 0.66 | 0.982693 |
Target: 5'- ---cCGGGAUCGguuUCUgGCCGACCu -3' miRNA: 3'- aggaGCCUUAGCau-GGAgCGGUUGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 49482 | 0.66 | 0.982693 |
Target: 5'- gCCgCGGGucuGUCG-ACCUCGUC-GCCGu -3' miRNA: 3'- aGGaGCCU---UAGCaUGGAGCGGuUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 119538 | 0.66 | 0.982693 |
Target: 5'- cCCUCGuccgCG-GCCgUCGCCGGCCa -3' miRNA: 3'- aGGAGCcuuaGCaUGG-AGCGGUUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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