miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10994 5' -54.2 NC_002794.1 + 43173 0.67 0.967994
Target:  5'- gCgaCGGAAUagcgGUugCgcgCGCCGACCGg -3'
miRNA:   3'- aGgaGCCUUAg---CAugGa--GCGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 125299 0.67 0.967994
Target:  5'- uUCCUgaCGGAAgagcCGUucGCCcgCGCCgAGCCGg -3'
miRNA:   3'- -AGGA--GCCUUa---GCA--UGGa-GCGG-UUGGC- -5'
10994 5' -54.2 NC_002794.1 + 84887 0.67 0.964875
Target:  5'- aCgUCGGGcugUGUGCCUCGCUGcCCa -3'
miRNA:   3'- aGgAGCCUua-GCAUGGAGCGGUuGGc -5'
10994 5' -54.2 NC_002794.1 + 19285 0.67 0.964875
Target:  5'- cUCCUggccUGGAGccUCGUcGCgUCGCUGACCGc -3'
miRNA:   3'- -AGGA----GCCUU--AGCA-UGgAGCGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 148635 0.67 0.964875
Target:  5'- cUCCgaucgCGGcggCGUGCUcggcuacgCGCCGACCGa -3'
miRNA:   3'- -AGGa----GCCuuaGCAUGGa-------GCGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 131306 0.67 0.964875
Target:  5'- gCC-CGuGGUCGUcACCUCGCCcuggguGGCCGg -3'
miRNA:   3'- aGGaGCcUUAGCA-UGGAGCGG------UUGGC- -5'
10994 5' -54.2 NC_002794.1 + 40597 0.67 0.964875
Target:  5'- cUCCUCcGAGUCGUcGCCggCGuCCGACUc -3'
miRNA:   3'- -AGGAGcCUUAGCA-UGGa-GC-GGUUGGc -5'
10994 5' -54.2 NC_002794.1 + 193228 0.67 0.964875
Target:  5'- uUCgCUCGuGGUCGUagcACCacaGCCGACCGa -3'
miRNA:   3'- -AG-GAGCcUUAGCA---UGGag-CGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 71950 0.67 0.961548
Target:  5'- cUCCUCGccgaCGUACCggCGCauCAGCCGg -3'
miRNA:   3'- -AGGAGCcuuaGCAUGGa-GCG--GUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 47483 0.67 0.961548
Target:  5'- gCC-CGGggUCGaGCUUCaCCAGCUGc -3'
miRNA:   3'- aGGaGCCuuAGCaUGGAGcGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 52962 0.67 0.961548
Target:  5'- gUCCUCGGccaggugcUCG-GCCUCGUCcuccuGACCGa -3'
miRNA:   3'- -AGGAGCCuu------AGCaUGGAGCGG-----UUGGC- -5'
10994 5' -54.2 NC_002794.1 + 48540 0.67 0.954254
Target:  5'- -gCUCGG-GUCGgccgACCacucCGCCGGCCGc -3'
miRNA:   3'- agGAGCCuUAGCa---UGGa---GCGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 108941 0.68 0.950278
Target:  5'- cUUCUCGGA--CGUGCUUC-UCGACCGu -3'
miRNA:   3'- -AGGAGCCUuaGCAUGGAGcGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 150523 0.68 0.950278
Target:  5'- cUCCUCGGcccCGUaGCCgggccggCGCCAugGCCGu -3'
miRNA:   3'- -AGGAGCCuuaGCA-UGGa------GCGGU--UGGC- -5'
10994 5' -54.2 NC_002794.1 + 105606 0.68 0.946078
Target:  5'- gUCUUCGGcGGUCGUcaGgCUCGgCGACCa -3'
miRNA:   3'- -AGGAGCC-UUAGCA--UgGAGCgGUUGGc -5'
10994 5' -54.2 NC_002794.1 + 58918 0.68 0.941651
Target:  5'- aUCUCGGA--CGUGCCgCGCCugcacGCCa -3'
miRNA:   3'- aGGAGCCUuaGCAUGGaGCGGu----UGGc -5'
10994 5' -54.2 NC_002794.1 + 189862 0.68 0.941651
Target:  5'- gCCgUCGGcGUCGUcGCC--GCCGACCGg -3'
miRNA:   3'- aGG-AGCCuUAGCA-UGGagCGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 142973 0.68 0.941651
Target:  5'- cUCCUCGucGAGgggcugCGUGCC-CGCCGugGCCa -3'
miRNA:   3'- -AGGAGC--CUUa-----GCAUGGaGCGGU--UGGc -5'
10994 5' -54.2 NC_002794.1 + 65245 0.68 0.941651
Target:  5'- gCCgcggCGGcGAUCcgGCCUCGCCGAgCGg -3'
miRNA:   3'- aGGa---GCC-UUAGcaUGGAGCGGUUgGC- -5'
10994 5' -54.2 NC_002794.1 + 141791 0.68 0.936995
Target:  5'- gUCCgaCGGGcgCGggucgGCCUCGgaCAGCCGg -3'
miRNA:   3'- -AGGa-GCCUuaGCa----UGGAGCg-GUUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.