miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10994 5' -54.2 NC_002794.1 + 12369 0.68 0.932109
Target:  5'- aCCUCGG---CGUG-CUCGCCuGCCGc -3'
miRNA:   3'- aGGAGCCuuaGCAUgGAGCGGuUGGC- -5'
10994 5' -54.2 NC_002794.1 + 19285 0.67 0.964875
Target:  5'- cUCCUggccUGGAGccUCGUcGCgUCGCUGACCGc -3'
miRNA:   3'- -AGGA----GCCUU--AGCA-UGgAGCGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 21568 0.66 0.976165
Target:  5'- cUCCUCGGGuUCGUcg--UGCgCGACCGg -3'
miRNA:   3'- -AGGAGCCUuAGCAuggaGCG-GUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 40597 0.67 0.964875
Target:  5'- cUCCUCcGAGUCGUcGCCggCGuCCGACUc -3'
miRNA:   3'- -AGGAGcCUUAGCA-UGGa-GC-GGUUGGc -5'
10994 5' -54.2 NC_002794.1 + 43173 0.67 0.967994
Target:  5'- gCgaCGGAAUagcgGUugCgcgCGCCGACCGg -3'
miRNA:   3'- aGgaGCCUUAg---CAugGa--GCGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 47483 0.67 0.961548
Target:  5'- gCC-CGGggUCGaGCUUCaCCAGCUGc -3'
miRNA:   3'- aGGaGCCuuAGCaUGGAGcGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 48540 0.67 0.954254
Target:  5'- -gCUCGG-GUCGgccgACCacucCGCCGGCCGc -3'
miRNA:   3'- agGAGCCuUAGCa---UGGa---GCGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 49482 0.66 0.982693
Target:  5'- gCCgCGGGucuGUCG-ACCUCGUC-GCCGu -3'
miRNA:   3'- aGGaGCCU---UAGCaUGGAGCGGuUGGC- -5'
10994 5' -54.2 NC_002794.1 + 52962 0.67 0.961548
Target:  5'- gUCCUCGGccaggugcUCG-GCCUCGUCcuccuGACCGa -3'
miRNA:   3'- -AGGAGCCuu------AGCaUGGAGCGG-----UUGGC- -5'
10994 5' -54.2 NC_002794.1 + 53719 0.77 0.543509
Target:  5'- cCCUCGGggUggaccCGcGCCaUCGCCGGCCGc -3'
miRNA:   3'- aGGAGCCuuA-----GCaUGG-AGCGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 54133 0.71 0.855768
Target:  5'- aUCUUCGGca-CGUugUUgGCCAGCCGc -3'
miRNA:   3'- -AGGAGCCuuaGCAugGAgCGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 58918 0.68 0.941651
Target:  5'- aUCUCGGA--CGUGCCgCGCCugcacGCCa -3'
miRNA:   3'- aGGAGCCUuaGCAUGGaGCGGu----UGGc -5'
10994 5' -54.2 NC_002794.1 + 65245 0.68 0.941651
Target:  5'- gCCgcggCGGcGAUCcgGCCUCGCCGAgCGg -3'
miRNA:   3'- aGGa---GCC-UUAGcaUGGAGCGGUUgGC- -5'
10994 5' -54.2 NC_002794.1 + 65292 0.69 0.921641
Target:  5'- cCCUCGGcGUCGU-CCUCGagaCGACa- -3'
miRNA:   3'- aGGAGCCuUAGCAuGGAGCg--GUUGgc -5'
10994 5' -54.2 NC_002794.1 + 67447 0.66 0.973633
Target:  5'- gCUUCGGGcUCccGCCcgcacUCGCCGACCa -3'
miRNA:   3'- aGGAGCCUuAGcaUGG-----AGCGGUUGGc -5'
10994 5' -54.2 NC_002794.1 + 67646 0.66 0.980688
Target:  5'- gCC-CGGcGUCcacauccgccaaGUgacagACCUCGCCGACCGu -3'
miRNA:   3'- aGGaGCCuUAG------------CA-----UGGAGCGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 68861 0.69 0.926991
Target:  5'- aCCcCGGAGcUCGgg-CUCGCCGGCCu -3'
miRNA:   3'- aGGaGCCUU-AGCaugGAGCGGUUGGc -5'
10994 5' -54.2 NC_002794.1 + 71950 0.67 0.961548
Target:  5'- cUCCUCGccgaCGUACCggCGCauCAGCCGg -3'
miRNA:   3'- -AGGAGCcuuaGCAUGGa-GCG--GUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 72879 0.73 0.723055
Target:  5'- cUCCUCGGccgGGUCGcggcccuCCUCGCCA-CCGu -3'
miRNA:   3'- -AGGAGCC---UUAGCau-----GGAGCGGUuGGC- -5'
10994 5' -54.2 NC_002794.1 + 73239 0.75 0.64345
Target:  5'- cUCCUCGGccacuccGUCGUcuccccgaccccACCUcCGCCGACCGc -3'
miRNA:   3'- -AGGAGCCu------UAGCA------------UGGA-GCGGUUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.