miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10994 5' -54.2 NC_002794.1 + 75285 0.71 0.848021
Target:  5'- aCC-CGGccggcCGgcGCCUCGCCAGCCGa -3'
miRNA:   3'- aGGaGCCuua--GCa-UGGAGCGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 78867 0.66 0.980688
Target:  5'- cUCUCGGAGcucagccgccUCG-ACCUCcUCGGCCGg -3'
miRNA:   3'- aGGAGCCUU----------AGCaUGGAGcGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 80204 0.7 0.870667
Target:  5'- gCCUgGGcGGUCGacgacGCCUCGCCGcacACCGg -3'
miRNA:   3'- aGGAgCC-UUAGCa----UGGAGCGGU---UGGC- -5'
10994 5' -54.2 NC_002794.1 + 80720 0.69 0.91606
Target:  5'- gCCUUGGAcGUCG-ACCUgGCCcuCCGc -3'
miRNA:   3'- aGGAGCCU-UAGCaUGGAgCGGuuGGC- -5'
10994 5' -54.2 NC_002794.1 + 82056 0.71 0.855768
Target:  5'- gCggCGGcGUCGUccucgGCCUCGCCGGCCc -3'
miRNA:   3'- aGgaGCCuUAGCA-----UGGAGCGGUUGGc -5'
10994 5' -54.2 NC_002794.1 + 84887 0.67 0.964875
Target:  5'- aCgUCGGGcugUGUGCCUCGCUGcCCa -3'
miRNA:   3'- aGgAGCCUua-GCAUGGAGCGGUuGGc -5'
10994 5' -54.2 NC_002794.1 + 88743 0.7 0.877104
Target:  5'- aCCUCGGggUCGccgaggaauguggUGCCUgGCgucGCCGg -3'
miRNA:   3'- aGGAGCCuuAGC-------------AUGGAgCGgu-UGGC- -5'
10994 5' -54.2 NC_002794.1 + 89244 0.66 0.976165
Target:  5'- -aCUCGGcgg-GUACCgUCGCUGGCCGu -3'
miRNA:   3'- agGAGCCuuagCAUGG-AGCGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 96960 0.71 0.854234
Target:  5'- aCCUCGGccgacaccacCGUGCCUCGCgAGCgCGu -3'
miRNA:   3'- aGGAGCCuua-------GCAUGGAGCGgUUG-GC- -5'
10994 5' -54.2 NC_002794.1 + 98989 0.73 0.713278
Target:  5'- gCCUCGGuGGUCGgcgGCUUCGUCAGCUu -3'
miRNA:   3'- aGGAGCC-UUAGCa--UGGAGCGGUUGGc -5'
10994 5' -54.2 NC_002794.1 + 102874 0.66 0.982693
Target:  5'- ---cCGGGAUCGguuUCUgGCCGACCu -3'
miRNA:   3'- aggaGCCUUAGCau-GGAgCGGUUGGc -5'
10994 5' -54.2 NC_002794.1 + 103825 0.66 0.973633
Target:  5'- gCCgacgUGGAGUCGcagGCCUUGaCCA-CCGa -3'
miRNA:   3'- aGGa---GCCUUAGCa--UGGAGC-GGUuGGC- -5'
10994 5' -54.2 NC_002794.1 + 105606 0.68 0.946078
Target:  5'- gUCUUCGGcGGUCGUcaGgCUCGgCGACCa -3'
miRNA:   3'- -AGGAGCC-UUAGCA--UgGAGCgGUUGGc -5'
10994 5' -54.2 NC_002794.1 + 105800 0.66 0.982693
Target:  5'- gUCUCGGAGaCGgACCgaaaGCgCGACCGg -3'
miRNA:   3'- aGGAGCCUUaGCaUGGag--CG-GUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 108941 0.68 0.950278
Target:  5'- cUUCUCGGA--CGUGCUUC-UCGACCGu -3'
miRNA:   3'- -AGGAGCCUuaGCAUGGAGcGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 109545 0.66 0.982693
Target:  5'- gCCgggCGGAccgGUC-UACCUCGCCccCCa -3'
miRNA:   3'- aGGa--GCCU---UAGcAUGGAGCGGuuGGc -5'
10994 5' -54.2 NC_002794.1 + 116217 0.69 0.91606
Target:  5'- gCCUCGGccgcgcggcucgAGUCGaUGCC-CGCCGugCGc -3'
miRNA:   3'- aGGAGCC------------UUAGC-AUGGaGCGGUugGC- -5'
10994 5' -54.2 NC_002794.1 + 119499 0.77 0.533734
Target:  5'- gUCCUCGGggUCGUcggcgGCgCggaGCCGGCCGc -3'
miRNA:   3'- -AGGAGCCuuAGCA-----UG-Gag-CGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 119538 0.66 0.982693
Target:  5'- cCCUCGuccgCG-GCCgUCGCCGGCCa -3'
miRNA:   3'- aGGAGCcuuaGCaUGG-AGCGGUUGGc -5'
10994 5' -54.2 NC_002794.1 + 124926 0.66 0.973633
Target:  5'- gUCCUCGGugcgCGUggACCUCGaCUucuCCGu -3'
miRNA:   3'- -AGGAGCCuua-GCA--UGGAGC-GGuu-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.