miRNA display CGI


Results 41 - 60 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10994 5' -54.2 NC_002794.1 + 125299 0.67 0.967994
Target:  5'- uUCCUgaCGGAAgagcCGUucGCCcgCGCCgAGCCGg -3'
miRNA:   3'- -AGGA--GCCUUa---GCA--UGGa-GCGG-UUGGC- -5'
10994 5' -54.2 NC_002794.1 + 128172 0.68 0.936995
Target:  5'- gCCgCGGAcggGUCGgugACCUCGUCggUCGc -3'
miRNA:   3'- aGGaGCCU---UAGCa--UGGAGCGGuuGGC- -5'
10994 5' -54.2 NC_002794.1 + 128367 0.71 0.815203
Target:  5'- aCCUCGGAAcgagcUCGgacgUCUCGCCGAucCCGg -3'
miRNA:   3'- aGGAGCCUU-----AGCau--GGAGCGGUU--GGC- -5'
10994 5' -54.2 NC_002794.1 + 129255 0.66 0.980478
Target:  5'- -aCUCGG-GUCGagcGCCUCGUCGugagcggGCCGg -3'
miRNA:   3'- agGAGCCuUAGCa--UGGAGCGGU-------UGGC- -5'
10994 5' -54.2 NC_002794.1 + 131306 0.67 0.964875
Target:  5'- gCC-CGuGGUCGUcACCUCGCCcuggguGGCCGg -3'
miRNA:   3'- aGGaGCcUUAGCA-UGGAGCGG------UUGGC- -5'
10994 5' -54.2 NC_002794.1 + 137545 0.66 0.980688
Target:  5'- gUCUUCGGGcgcgaagaacGUCGcGCCgccgUCGCC-GCCGg -3'
miRNA:   3'- -AGGAGCCU----------UAGCaUGG----AGCGGuUGGC- -5'
10994 5' -54.2 NC_002794.1 + 138873 0.66 0.970911
Target:  5'- gCCUCgcgGGAGUCGUcGCuCUCGCCuuCUu -3'
miRNA:   3'- aGGAG---CCUUAGCA-UG-GAGCGGuuGGc -5'
10994 5' -54.2 NC_002794.1 + 141791 0.68 0.936995
Target:  5'- gUCCgaCGGGcgCGggucgGCCUCGgaCAGCCGg -3'
miRNA:   3'- -AGGa-GCCUuaGCa----UGGAGCg-GUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 142973 0.68 0.941651
Target:  5'- cUCCUCGucGAGgggcugCGUGCC-CGCCGugGCCa -3'
miRNA:   3'- -AGGAGC--CUUa-----GCAUGGaGCGGU--UGGc -5'
10994 5' -54.2 NC_002794.1 + 143721 0.74 0.673591
Target:  5'- cCCggCGGGcGUCGU-CCUCGCCcGCCGg -3'
miRNA:   3'- aGGa-GCCU-UAGCAuGGAGCGGuUGGC- -5'
10994 5' -54.2 NC_002794.1 + 146230 0.69 0.921641
Target:  5'- cUCCUCGGucgcggcGUCGUcauCgUCGUCGACCu -3'
miRNA:   3'- -AGGAGCCu------UAGCAu--GgAGCGGUUGGc -5'
10994 5' -54.2 NC_002794.1 + 148635 0.67 0.964875
Target:  5'- cUCCgaucgCGGcggCGUGCUcggcuacgCGCCGACCGa -3'
miRNA:   3'- -AGGa----GCCuuaGCAUGGa-------GCGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 150523 0.68 0.950278
Target:  5'- cUCCUCGGcccCGUaGCCgggccggCGCCAugGCCGu -3'
miRNA:   3'- -AGGAGCCuuaGCA-UGGa------GCGGU--UGGC- -5'
10994 5' -54.2 NC_002794.1 + 154314 0.7 0.877808
Target:  5'- cUCCUCGGGagagcggcgucgGUCGUcCCgggUGCCGcgGCCGa -3'
miRNA:   3'- -AGGAGCCU------------UAGCAuGGa--GCGGU--UGGC- -5'
10994 5' -54.2 NC_002794.1 + 177606 0.67 0.967994
Target:  5'- gCCUCGGGucgGUCGaucgcuCCUCgacgacgagGCCGACCa -3'
miRNA:   3'- aGGAGCCU---UAGCau----GGAG---------CGGUUGGc -5'
10994 5' -54.2 NC_002794.1 + 182103 0.66 0.973633
Target:  5'- uUCUUCGcGGuagCGgauCCggCGCCAGCCGa -3'
miRNA:   3'- -AGGAGC-CUua-GCau-GGa-GCGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 186125 0.66 0.979404
Target:  5'- gUCCcCGGAucuccagcacggcCGUcacgccuuccGCCUCGCCGGCCu -3'
miRNA:   3'- -AGGaGCCUua-----------GCA----------UGGAGCGGUUGGc -5'
10994 5' -54.2 NC_002794.1 + 187563 0.66 0.978514
Target:  5'- gCCgUCGGGccCGUACC-CGCCGucggcgcgGCCGc -3'
miRNA:   3'- aGG-AGCCUuaGCAUGGaGCGGU--------UGGC- -5'
10994 5' -54.2 NC_002794.1 + 188218 0.68 0.936995
Target:  5'- gUCCUCGucGUCGUcgucaucguCgUCGUCGACCGg -3'
miRNA:   3'- -AGGAGCcuUAGCAu--------GgAGCGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 189761 0.69 0.904208
Target:  5'- -aCUCGGuuUCgGUGCaC-CGCCAGCCGc -3'
miRNA:   3'- agGAGCCuuAG-CAUG-GaGCGGUUGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.