Results 61 - 67 of 67 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 10994 | 5' | -54.2 | NC_002794.1 | + | 189862 | 0.68 | 0.941651 |
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Target: 5'- gCCgUCGGcGUCGUcGCC--GCCGACCGg -3' miRNA: 3'- aGG-AGCCuUAGCA-UGGagCGGUUGGC- -5' |
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| 10994 | 5' | -54.2 | NC_002794.1 | + | 191140 | 0.7 | 0.870667 |
|
Target: 5'- cCCUCGaAGUCGUccagcACCUCGUCGuACCa -3' miRNA: 3'- aGGAGCcUUAGCA-----UGGAGCGGU-UGGc -5' |
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| 10994 | 5' | -54.2 | NC_002794.1 | + | 191625 | 0.66 | 0.978514 |
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Target: 5'- aCCgaaCGGggUUuccGCCUCGCCGuccagcagcccGCCGg -3' miRNA: 3'- aGGa--GCCuuAGca-UGGAGCGGU-----------UGGC- -5' |
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| 10994 | 5' | -54.2 | NC_002794.1 | + | 191767 | 0.76 | 0.567196 |
|
Target: 5'- cCCUCGGAAUCGU-CCgcgacgcucgaacguUCGCuCGACCGc -3' miRNA: 3'- aGGAGCCUUAGCAuGG---------------AGCG-GUUGGC- -5' |
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| 10994 | 5' | -54.2 | NC_002794.1 | + | 192354 | 0.69 | 0.91606 |
|
Target: 5'- aCCUCGGccUCc-GCCgcCGCCGACCGa -3' miRNA: 3'- aGGAGCCuuAGcaUGGa-GCGGUUGGC- -5' |
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| 10994 | 5' | -54.2 | NC_002794.1 | + | 193228 | 0.67 | 0.964875 |
|
Target: 5'- uUCgCUCGuGGUCGUagcACCacaGCCGACCGa -3' miRNA: 3'- -AG-GAGCcUUAGCA---UGGag-CGGUUGGC- -5' |
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| 10994 | 5' | -54.2 | NC_002794.1 | + | 193385 | 0.69 | 0.921641 |
|
Target: 5'- cUCCUCGccGUCGUccGCCUCGCgCucGCCu -3' miRNA: 3'- -AGGAGCcuUAGCA--UGGAGCG-Gu-UGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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