Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10994 | 5' | -54.2 | NC_002794.1 | + | 138873 | 0.66 | 0.970911 |
Target: 5'- gCCUCgcgGGAGUCGUcGCuCUCGCCuuCUu -3' miRNA: 3'- aGGAG---CCUUAGCA-UG-GAGCGGuuGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 137545 | 0.66 | 0.980688 |
Target: 5'- gUCUUCGGGcgcgaagaacGUCGcGCCgccgUCGCC-GCCGg -3' miRNA: 3'- -AGGAGCCU----------UAGCaUGG----AGCGGuUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 131306 | 0.67 | 0.964875 |
Target: 5'- gCC-CGuGGUCGUcACCUCGCCcuggguGGCCGg -3' miRNA: 3'- aGGaGCcUUAGCA-UGGAGCGG------UUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 129255 | 0.66 | 0.980478 |
Target: 5'- -aCUCGG-GUCGagcGCCUCGUCGugagcggGCCGg -3' miRNA: 3'- agGAGCCuUAGCa--UGGAGCGGU-------UGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 128367 | 0.71 | 0.815203 |
Target: 5'- aCCUCGGAAcgagcUCGgacgUCUCGCCGAucCCGg -3' miRNA: 3'- aGGAGCCUU-----AGCau--GGAGCGGUU--GGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 128172 | 0.68 | 0.936995 |
Target: 5'- gCCgCGGAcggGUCGgugACCUCGUCggUCGc -3' miRNA: 3'- aGGaGCCU---UAGCa--UGGAGCGGuuGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 125299 | 0.67 | 0.967994 |
Target: 5'- uUCCUgaCGGAAgagcCGUucGCCcgCGCCgAGCCGg -3' miRNA: 3'- -AGGA--GCCUUa---GCA--UGGa-GCGG-UUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 124926 | 0.66 | 0.973633 |
Target: 5'- gUCCUCGGugcgCGUggACCUCGaCUucuCCGu -3' miRNA: 3'- -AGGAGCCuua-GCA--UGGAGC-GGuu-GGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 119538 | 0.66 | 0.982693 |
Target: 5'- cCCUCGuccgCG-GCCgUCGCCGGCCa -3' miRNA: 3'- aGGAGCcuuaGCaUGG-AGCGGUUGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 119499 | 0.77 | 0.533734 |
Target: 5'- gUCCUCGGggUCGUcggcgGCgCggaGCCGGCCGc -3' miRNA: 3'- -AGGAGCCuuAGCA-----UG-Gag-CGGUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 116217 | 0.69 | 0.91606 |
Target: 5'- gCCUCGGccgcgcggcucgAGUCGaUGCC-CGCCGugCGc -3' miRNA: 3'- aGGAGCC------------UUAGC-AUGGaGCGGUugGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 109545 | 0.66 | 0.982693 |
Target: 5'- gCCgggCGGAccgGUC-UACCUCGCCccCCa -3' miRNA: 3'- aGGa--GCCU---UAGcAUGGAGCGGuuGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 108941 | 0.68 | 0.950278 |
Target: 5'- cUUCUCGGA--CGUGCUUC-UCGACCGu -3' miRNA: 3'- -AGGAGCCUuaGCAUGGAGcGGUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 105800 | 0.66 | 0.982693 |
Target: 5'- gUCUCGGAGaCGgACCgaaaGCgCGACCGg -3' miRNA: 3'- aGGAGCCUUaGCaUGGag--CG-GUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 105606 | 0.68 | 0.946078 |
Target: 5'- gUCUUCGGcGGUCGUcaGgCUCGgCGACCa -3' miRNA: 3'- -AGGAGCC-UUAGCA--UgGAGCgGUUGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 103825 | 0.66 | 0.973633 |
Target: 5'- gCCgacgUGGAGUCGcagGCCUUGaCCA-CCGa -3' miRNA: 3'- aGGa---GCCUUAGCa--UGGAGC-GGUuGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 102874 | 0.66 | 0.982693 |
Target: 5'- ---cCGGGAUCGguuUCUgGCCGACCu -3' miRNA: 3'- aggaGCCUUAGCau-GGAgCGGUUGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 98989 | 0.73 | 0.713278 |
Target: 5'- gCCUCGGuGGUCGgcgGCUUCGUCAGCUu -3' miRNA: 3'- aGGAGCC-UUAGCa--UGGAGCGGUUGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 96960 | 0.71 | 0.854234 |
Target: 5'- aCCUCGGccgacaccacCGUGCCUCGCgAGCgCGu -3' miRNA: 3'- aGGAGCCuua-------GCAUGGAGCGgUUG-GC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 89244 | 0.66 | 0.976165 |
Target: 5'- -aCUCGGcgg-GUACCgUCGCUGGCCGu -3' miRNA: 3'- agGAGCCuuagCAUGG-AGCGGUUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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