miRNA display CGI


Results 41 - 60 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10994 5' -54.2 NC_002794.1 + 88743 0.7 0.877104
Target:  5'- aCCUCGGggUCGccgaggaauguggUGCCUgGCgucGCCGg -3'
miRNA:   3'- aGGAGCCuuAGC-------------AUGGAgCGgu-UGGC- -5'
10994 5' -54.2 NC_002794.1 + 84887 0.67 0.964875
Target:  5'- aCgUCGGGcugUGUGCCUCGCUGcCCa -3'
miRNA:   3'- aGgAGCCUua-GCAUGGAGCGGUuGGc -5'
10994 5' -54.2 NC_002794.1 + 82056 0.71 0.855768
Target:  5'- gCggCGGcGUCGUccucgGCCUCGCCGGCCc -3'
miRNA:   3'- aGgaGCCuUAGCA-----UGGAGCGGUUGGc -5'
10994 5' -54.2 NC_002794.1 + 80720 0.69 0.91606
Target:  5'- gCCUUGGAcGUCG-ACCUgGCCcuCCGc -3'
miRNA:   3'- aGGAGCCU-UAGCaUGGAgCGGuuGGC- -5'
10994 5' -54.2 NC_002794.1 + 80204 0.7 0.870667
Target:  5'- gCCUgGGcGGUCGacgacGCCUCGCCGcacACCGg -3'
miRNA:   3'- aGGAgCC-UUAGCa----UGGAGCGGU---UGGC- -5'
10994 5' -54.2 NC_002794.1 + 78867 0.66 0.980688
Target:  5'- cUCUCGGAGcucagccgccUCG-ACCUCcUCGGCCGg -3'
miRNA:   3'- aGGAGCCUU----------AGCaUGGAGcGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 75285 0.71 0.848021
Target:  5'- aCC-CGGccggcCGgcGCCUCGCCAGCCGa -3'
miRNA:   3'- aGGaGCCuua--GCa-UGGAGCGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 73239 0.75 0.64345
Target:  5'- cUCCUCGGccacuccGUCGUcuccccgaccccACCUcCGCCGACCGc -3'
miRNA:   3'- -AGGAGCCu------UAGCA------------UGGA-GCGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 72879 0.73 0.723055
Target:  5'- cUCCUCGGccgGGUCGcggcccuCCUCGCCA-CCGu -3'
miRNA:   3'- -AGGAGCC---UUAGCau-----GGAGCGGUuGGC- -5'
10994 5' -54.2 NC_002794.1 + 71950 0.67 0.961548
Target:  5'- cUCCUCGccgaCGUACCggCGCauCAGCCGg -3'
miRNA:   3'- -AGGAGCcuuaGCAUGGa-GCG--GUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 68861 0.69 0.926991
Target:  5'- aCCcCGGAGcUCGgg-CUCGCCGGCCu -3'
miRNA:   3'- aGGaGCCUU-AGCaugGAGCGGUUGGc -5'
10994 5' -54.2 NC_002794.1 + 67646 0.66 0.980688
Target:  5'- gCC-CGGcGUCcacauccgccaaGUgacagACCUCGCCGACCGu -3'
miRNA:   3'- aGGaGCCuUAG------------CA-----UGGAGCGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 67447 0.66 0.973633
Target:  5'- gCUUCGGGcUCccGCCcgcacUCGCCGACCa -3'
miRNA:   3'- aGGAGCCUuAGcaUGG-----AGCGGUUGGc -5'
10994 5' -54.2 NC_002794.1 + 65292 0.69 0.921641
Target:  5'- cCCUCGGcGUCGU-CCUCGagaCGACa- -3'
miRNA:   3'- aGGAGCCuUAGCAuGGAGCg--GUUGgc -5'
10994 5' -54.2 NC_002794.1 + 65245 0.68 0.941651
Target:  5'- gCCgcggCGGcGAUCcgGCCUCGCCGAgCGg -3'
miRNA:   3'- aGGa---GCC-UUAGcaUGGAGCGGUUgGC- -5'
10994 5' -54.2 NC_002794.1 + 58918 0.68 0.941651
Target:  5'- aUCUCGGA--CGUGCCgCGCCugcacGCCa -3'
miRNA:   3'- aGGAGCCUuaGCAUGGaGCGGu----UGGc -5'
10994 5' -54.2 NC_002794.1 + 54133 0.71 0.855768
Target:  5'- aUCUUCGGca-CGUugUUgGCCAGCCGc -3'
miRNA:   3'- -AGGAGCCuuaGCAugGAgCGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 53719 0.77 0.543509
Target:  5'- cCCUCGGggUggaccCGcGCCaUCGCCGGCCGc -3'
miRNA:   3'- aGGAGCCuuA-----GCaUGG-AGCGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 52962 0.67 0.961548
Target:  5'- gUCCUCGGccaggugcUCG-GCCUCGUCcuccuGACCGa -3'
miRNA:   3'- -AGGAGCCuu------AGCaUGGAGCGG-----UUGGC- -5'
10994 5' -54.2 NC_002794.1 + 49482 0.66 0.982693
Target:  5'- gCCgCGGGucuGUCG-ACCUCGUC-GCCGu -3'
miRNA:   3'- aGGaGCCU---UAGCaUGGAGCGGuUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.