Results 41 - 60 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10994 | 5' | -54.2 | NC_002794.1 | + | 49482 | 0.66 | 0.982693 |
Target: 5'- gCCgCGGGucuGUCG-ACCUCGUC-GCCGu -3' miRNA: 3'- aGGaGCCU---UAGCaUGGAGCGGuUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 137545 | 0.66 | 0.980688 |
Target: 5'- gUCUUCGGGcgcgaagaacGUCGcGCCgccgUCGCC-GCCGg -3' miRNA: 3'- -AGGAGCCU----------UAGCaUGG----AGCGGuUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 102874 | 0.66 | 0.982693 |
Target: 5'- ---cCGGGAUCGguuUCUgGCCGACCu -3' miRNA: 3'- aggaGCCUUAGCau-GGAgCGGUUGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 109545 | 0.66 | 0.982693 |
Target: 5'- gCCgggCGGAccgGUC-UACCUCGCCccCCa -3' miRNA: 3'- aGGa--GCCU---UAGcAUGGAGCGGuuGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 105800 | 0.66 | 0.982693 |
Target: 5'- gUCUCGGAGaCGgACCgaaaGCgCGACCGg -3' miRNA: 3'- aGGAGCCUUaGCaUGGag--CG-GUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 182103 | 0.66 | 0.973633 |
Target: 5'- uUCUUCGcGGuagCGgauCCggCGCCAGCCGa -3' miRNA: 3'- -AGGAGC-CUua-GCau-GGa-GCGGUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 124926 | 0.66 | 0.973633 |
Target: 5'- gUCCUCGGugcgCGUggACCUCGaCUucuCCGu -3' miRNA: 3'- -AGGAGCCuua-GCA--UGGAGC-GGuu-GGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 84887 | 0.67 | 0.964875 |
Target: 5'- aCgUCGGGcugUGUGCCUCGCUGcCCa -3' miRNA: 3'- aGgAGCCUua-GCAUGGAGCGGUuGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 71950 | 0.67 | 0.961548 |
Target: 5'- cUCCUCGccgaCGUACCggCGCauCAGCCGg -3' miRNA: 3'- -AGGAGCcuuaGCAUGGa-GCG--GUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 19285 | 0.67 | 0.964875 |
Target: 5'- cUCCUggccUGGAGccUCGUcGCgUCGCUGACCGc -3' miRNA: 3'- -AGGA----GCCUU--AGCA-UGgAGCGGUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 148635 | 0.67 | 0.964875 |
Target: 5'- cUCCgaucgCGGcggCGUGCUcggcuacgCGCCGACCGa -3' miRNA: 3'- -AGGa----GCCuuaGCAUGGa-------GCGGUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 131306 | 0.67 | 0.964875 |
Target: 5'- gCC-CGuGGUCGUcACCUCGCCcuggguGGCCGg -3' miRNA: 3'- aGGaGCcUUAGCA-UGGAGCGG------UUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 40597 | 0.67 | 0.964875 |
Target: 5'- cUCCUCcGAGUCGUcGCCggCGuCCGACUc -3' miRNA: 3'- -AGGAGcCUUAGCA-UGGa-GC-GGUUGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 193228 | 0.67 | 0.964875 |
Target: 5'- uUCgCUCGuGGUCGUagcACCacaGCCGACCGa -3' miRNA: 3'- -AG-GAGCcUUAGCA---UGGag-CGGUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 177606 | 0.67 | 0.967994 |
Target: 5'- gCCUCGGGucgGUCGaucgcuCCUCgacgacgagGCCGACCa -3' miRNA: 3'- aGGAGCCU---UAGCau----GGAG---------CGGUUGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 43173 | 0.67 | 0.967994 |
Target: 5'- gCgaCGGAAUagcgGUugCgcgCGCCGACCGg -3' miRNA: 3'- aGgaGCCUUAg---CAugGa--GCGGUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 125299 | 0.67 | 0.967994 |
Target: 5'- uUCCUgaCGGAAgagcCGUucGCCcgCGCCgAGCCGg -3' miRNA: 3'- -AGGA--GCCUUa---GCA--UGGa-GCGG-UUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 67447 | 0.66 | 0.973633 |
Target: 5'- gCUUCGGGcUCccGCCcgcacUCGCCGACCa -3' miRNA: 3'- aGGAGCCUuAGcaUGG-----AGCGGUUGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 138873 | 0.66 | 0.970911 |
Target: 5'- gCCUCgcgGGAGUCGUcGCuCUCGCCuuCUu -3' miRNA: 3'- aGGAG---CCUUAGCA-UG-GAGCGGuuGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 103825 | 0.66 | 0.973633 |
Target: 5'- gCCgacgUGGAGUCGcagGCCUUGaCCA-CCGa -3' miRNA: 3'- aGGa---GCCUUAGCa--UGGAGC-GGUuGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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