Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10994 | 5' | -54.2 | NC_002794.1 | + | 43173 | 0.67 | 0.967994 |
Target: 5'- gCgaCGGAAUagcgGUugCgcgCGCCGACCGg -3' miRNA: 3'- aGgaGCCUUAg---CAugGa--GCGGUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 125299 | 0.67 | 0.967994 |
Target: 5'- uUCCUgaCGGAAgagcCGUucGCCcgCGCCgAGCCGg -3' miRNA: 3'- -AGGA--GCCUUa---GCA--UGGa-GCGG-UUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 186125 | 0.66 | 0.979404 |
Target: 5'- gUCCcCGGAucuccagcacggcCGUcacgccuuccGCCUCGCCGGCCu -3' miRNA: 3'- -AGGaGCCUua-----------GCA----------UGGAGCGGUUGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 187563 | 0.66 | 0.978514 |
Target: 5'- gCCgUCGGGccCGUACC-CGCCGucggcgcgGCCGc -3' miRNA: 3'- aGG-AGCCUuaGCAUGGaGCGGU--------UGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 78867 | 0.66 | 0.980688 |
Target: 5'- cUCUCGGAGcucagccgccUCG-ACCUCcUCGGCCGg -3' miRNA: 3'- aGGAGCCUU----------AGCaUGGAGcGGUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 49482 | 0.66 | 0.982693 |
Target: 5'- gCCgCGGGucuGUCG-ACCUCGUC-GCCGu -3' miRNA: 3'- aGGaGCCU---UAGCaUGGAGCGGuUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 137545 | 0.66 | 0.980688 |
Target: 5'- gUCUUCGGGcgcgaagaacGUCGcGCCgccgUCGCC-GCCGg -3' miRNA: 3'- -AGGAGCCU----------UAGCaUGG----AGCGGuUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 102874 | 0.66 | 0.982693 |
Target: 5'- ---cCGGGAUCGguuUCUgGCCGACCu -3' miRNA: 3'- aggaGCCUUAGCau-GGAgCGGUUGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 109545 | 0.66 | 0.982693 |
Target: 5'- gCCgggCGGAccgGUC-UACCUCGCCccCCa -3' miRNA: 3'- aGGa--GCCU---UAGcAUGGAGCGGuuGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 105800 | 0.66 | 0.982693 |
Target: 5'- gUCUCGGAGaCGgACCgaaaGCgCGACCGg -3' miRNA: 3'- aGGAGCCUUaGCaUGGag--CG-GUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 129255 | 0.66 | 0.980478 |
Target: 5'- -aCUCGG-GUCGagcGCCUCGUCGugagcggGCCGg -3' miRNA: 3'- agGAGCCuUAGCa--UGGAGCGGU-------UGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 67646 | 0.66 | 0.980688 |
Target: 5'- gCC-CGGcGUCcacauccgccaaGUgacagACCUCGCCGACCGu -3' miRNA: 3'- aGGaGCCuUAG------------CA-----UGGAGCGGUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 67447 | 0.66 | 0.973633 |
Target: 5'- gCUUCGGGcUCccGCCcgcacUCGCCGACCa -3' miRNA: 3'- aGGAGCCUuAGcaUGG-----AGCGGUUGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 138873 | 0.66 | 0.970911 |
Target: 5'- gCCUCgcgGGAGUCGUcGCuCUCGCCuuCUu -3' miRNA: 3'- aGGAG---CCUUAGCA-UG-GAGCGGuuGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 103825 | 0.66 | 0.973633 |
Target: 5'- gCCgacgUGGAGUCGcagGCCUUGaCCA-CCGa -3' miRNA: 3'- aGGa---GCCUUAGCa--UGGAGC-GGUuGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 124926 | 0.66 | 0.973633 |
Target: 5'- gUCCUCGGugcgCGUggACCUCGaCUucuCCGu -3' miRNA: 3'- -AGGAGCCuua-GCA--UGGAGC-GGuu-GGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 182103 | 0.66 | 0.973633 |
Target: 5'- uUCUUCGcGGuagCGgauCCggCGCCAGCCGa -3' miRNA: 3'- -AGGAGC-CUua-GCau-GGa-GCGGUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 21568 | 0.66 | 0.976165 |
Target: 5'- cUCCUCGGGuUCGUcg--UGCgCGACCGg -3' miRNA: 3'- -AGGAGCCUuAGCAuggaGCG-GUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 89244 | 0.66 | 0.976165 |
Target: 5'- -aCUCGGcgg-GUACCgUCGCUGGCCGu -3' miRNA: 3'- agGAGCCuuagCAUGG-AGCGGUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 191625 | 0.66 | 0.978514 |
Target: 5'- aCCgaaCGGggUUuccGCCUCGCCGuccagcagcccGCCGg -3' miRNA: 3'- aGGa--GCCuuAGca-UGGAGCGGU-----------UGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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