miRNA display CGI


Results 1 - 20 of 455 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10995 3' -64.3 NC_002794.1 + 114705 0.66 0.669502
Target:  5'- cCUGCGAgaCGgaCGGCGgCGGCggCGGCu -3'
miRNA:   3'- cGGCGCU--GCa-GCCGCgGCCGgaGCCG- -5'
10995 3' -64.3 NC_002794.1 + 91667 0.66 0.669502
Target:  5'- uGUCgGCGcACGUgGGCGCgcUGGUCUucagCGGCa -3'
miRNA:   3'- -CGG-CGC-UGCAgCCGCG--GCCGGA----GCCG- -5'
10995 3' -64.3 NC_002794.1 + 89924 0.66 0.669502
Target:  5'- cGCUagaGGCG-CgGGCGCCGGCUucUCGGg -3'
miRNA:   3'- -CGGcg-CUGCaG-CCGCGGCCGG--AGCCg -5'
10995 3' -64.3 NC_002794.1 + 4861 0.66 0.669502
Target:  5'- uGCC-CGACGaagcguaGGUGgUGGUCUCGGUc -3'
miRNA:   3'- -CGGcGCUGCag-----CCGCgGCCGGAGCCG- -5'
10995 3' -64.3 NC_002794.1 + 94662 0.66 0.669502
Target:  5'- aCCGcCGGC--UGuGC-CCGGCCUUGGCg -3'
miRNA:   3'- cGGC-GCUGcaGC-CGcGGCCGGAGCCG- -5'
10995 3' -64.3 NC_002794.1 + 123428 0.66 0.669502
Target:  5'- --aGCGACGaggCGGUGaCCGucGCCgagCGGCu -3'
miRNA:   3'- cggCGCUGCa--GCCGC-GGC--CGGa--GCCG- -5'
10995 3' -64.3 NC_002794.1 + 111431 0.66 0.669502
Target:  5'- aGCCGCcagaucGGCaGUCGGgGCgGGUucugcuCUUGGCu -3'
miRNA:   3'- -CGGCG------CUG-CAGCCgCGgCCG------GAGCCG- -5'
10995 3' -64.3 NC_002794.1 + 143569 0.66 0.669502
Target:  5'- aGCCGUGc-----GCGCCGuCCUCGGCg -3'
miRNA:   3'- -CGGCGCugcagcCGCGGCcGGAGCCG- -5'
10995 3' -64.3 NC_002794.1 + 107295 0.66 0.668569
Target:  5'- cGUCGuCGACGcUCcucgcgggGGCGCCguccgcgcgguucGGCUUCGGUc -3'
miRNA:   3'- -CGGC-GCUGC-AG--------CCGCGG-------------CCGGAGCCG- -5'
10995 3' -64.3 NC_002794.1 + 67039 0.66 0.663898
Target:  5'- cGCCGCGucGCGgaccCGGCguccgugggcuccucGCUGGCCUUGa- -3'
miRNA:   3'- -CGGCGC--UGCa---GCCG---------------CGGCCGGAGCcg -5'
10995 3' -64.3 NC_002794.1 + 40530 0.66 0.660157
Target:  5'- cGCCGacgggaGACGagGGgGCCGGC---GGCa -3'
miRNA:   3'- -CGGCg-----CUGCagCCgCGGCCGgagCCG- -5'
10995 3' -64.3 NC_002794.1 + 26073 0.66 0.660157
Target:  5'- cCCGCGcACGccacgCGGgGCagcgccgaCGGCCcCGGCg -3'
miRNA:   3'- cGGCGC-UGCa----GCCgCG--------GCCGGaGCCG- -5'
10995 3' -64.3 NC_002794.1 + 108401 0.66 0.660157
Target:  5'- gGCUcCGGCGgCGGCGCCcaCCaCGGCg -3'
miRNA:   3'- -CGGcGCUGCaGCCGCGGccGGaGCCG- -5'
10995 3' -64.3 NC_002794.1 + 108851 0.66 0.660157
Target:  5'- aCCGgGuguGUUGGCGCgCGGUcaccggguccaaCUCGGCg -3'
miRNA:   3'- cGGCgCug-CAGCCGCG-GCCG------------GAGCCG- -5'
10995 3' -64.3 NC_002794.1 + 99706 0.66 0.660157
Target:  5'- cGCCGCgGAUGUUcuuucGCGaCCGGCCguaCGuGCu -3'
miRNA:   3'- -CGGCG-CUGCAGc----CGC-GGCCGGa--GC-CG- -5'
10995 3' -64.3 NC_002794.1 + 55361 0.66 0.660157
Target:  5'- gGCCGaGGCGgccgaggCGGCcgaGgCGGCCgaggCGGCc -3'
miRNA:   3'- -CGGCgCUGCa------GCCG---CgGCCGGa---GCCG- -5'
10995 3' -64.3 NC_002794.1 + 121998 0.66 0.660157
Target:  5'- gGCCGgGAgcuguuccacguCGucuucuUCGGCGCCGGgcgUCUCGuGCa -3'
miRNA:   3'- -CGGCgCU------------GC------AGCCGCGGCC---GGAGC-CG- -5'
10995 3' -64.3 NC_002794.1 + 143691 0.66 0.660157
Target:  5'- uGCCGCagggucGCGUUGcccacCGCgGGCCcCGGCg -3'
miRNA:   3'- -CGGCGc-----UGCAGCc----GCGgCCGGaGCCG- -5'
10995 3' -64.3 NC_002794.1 + 131880 0.66 0.660157
Target:  5'- cGCCGCGGCcucaucucgGUCGcGCGCgGGCa-CGuGUa -3'
miRNA:   3'- -CGGCGCUG---------CAGC-CGCGgCCGgaGC-CG- -5'
10995 3' -64.3 NC_002794.1 + 91738 0.66 0.660157
Target:  5'- uCgGCGGCcaacaaGGUGCCGGCgggCGGCa -3'
miRNA:   3'- cGgCGCUGcag---CCGCGGCCGga-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.