miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10995 5' -54 NC_002794.1 + 90467 0.66 0.974358
Target:  5'- -cGAGGccgcGcgCGGCGGgGCCGCCGUc -3'
miRNA:   3'- caUUCUa---CuaGUCGUCgUGGCGGCGc -5'
10995 5' -54 NC_002794.1 + 106242 0.66 0.974358
Target:  5'- ------gGGUC-GCAG-ACCGCCGCGa -3'
miRNA:   3'- cauucuaCUAGuCGUCgUGGCGGCGC- -5'
10995 5' -54 NC_002794.1 + 116206 0.66 0.974358
Target:  5'- ---cGAUGAUCA-CGGCcuCgGCCGCGc -3'
miRNA:   3'- cauuCUACUAGUcGUCGu-GgCGGCGC- -5'
10995 5' -54 NC_002794.1 + 48885 0.66 0.974358
Target:  5'- --cAGGUGG-CAGgcCAGCGuuGCCGCa -3'
miRNA:   3'- cauUCUACUaGUC--GUCGUggCGGCGc -5'
10995 5' -54 NC_002794.1 + 182537 0.66 0.974358
Target:  5'- ------aGcgCGGCAGCGacugCGCCGCGg -3'
miRNA:   3'- cauucuaCuaGUCGUCGUg---GCGGCGC- -5'
10995 5' -54 NC_002794.1 + 67009 0.66 0.974358
Target:  5'- --cAGAcGAgucCGGCGGCGgcggccggcucCCGCCGCGu -3'
miRNA:   3'- cauUCUaCUa--GUCGUCGU-----------GGCGGCGC- -5'
10995 5' -54 NC_002794.1 + 62690 0.66 0.974094
Target:  5'- --cGGGUGcagcuguGUCGGCGGcCGCCGaCGCGa -3'
miRNA:   3'- cauUCUAC-------UAGUCGUC-GUGGCgGCGC- -5'
10995 5' -54 NC_002794.1 + 61520 0.66 0.971629
Target:  5'- ------gGA-CGGCGGCcgccggcgGCCGCCGCGa -3'
miRNA:   3'- cauucuaCUaGUCGUCG--------UGGCGGCGC- -5'
10995 5' -54 NC_002794.1 + 71437 0.66 0.971629
Target:  5'- cGUAGGccGc-CAGCAGacaCGCCGCCGCc -3'
miRNA:   3'- -CAUUCuaCuaGUCGUC---GUGGCGGCGc -5'
10995 5' -54 NC_002794.1 + 114028 0.66 0.971345
Target:  5'- -cAGGcgGggCAGCGGcCGCCcguagucGCCGCGc -3'
miRNA:   3'- caUUCuaCuaGUCGUC-GUGG-------CGGCGC- -5'
10995 5' -54 NC_002794.1 + 114270 0.66 0.968698
Target:  5'- -gGGGcgGGUCGuGCuGCACCaGCCGUu -3'
miRNA:   3'- caUUCuaCUAGU-CGuCGUGG-CGGCGc -5'
10995 5' -54 NC_002794.1 + 48437 0.66 0.968698
Target:  5'- -gGAGGUGG-CGGCGGCcaucgggacacaGCCGCCaCGu -3'
miRNA:   3'- caUUCUACUaGUCGUCG------------UGGCGGcGC- -5'
10995 5' -54 NC_002794.1 + 64845 0.66 0.968394
Target:  5'- --cGGAcgGcgCGGCGGCACCucgacguGCCGCu -3'
miRNA:   3'- cauUCUa-CuaGUCGUCGUGG-------CGGCGc -5'
10995 5' -54 NC_002794.1 + 31046 0.66 0.965558
Target:  5'- --cAGAUaGggCAGCGGCACgGCgGCc -3'
miRNA:   3'- cauUCUA-CuaGUCGUCGUGgCGgCGc -5'
10995 5' -54 NC_002794.1 + 98993 0.66 0.965558
Target:  5'- ---cGGUGGUCGGCGGCuuCGUCaGCu -3'
miRNA:   3'- cauuCUACUAGUCGUCGugGCGG-CGc -5'
10995 5' -54 NC_002794.1 + 86886 0.66 0.965558
Target:  5'- aGUAGGcccGAUCccGGCGGgGCCGCCGa- -3'
miRNA:   3'- -CAUUCua-CUAG--UCGUCgUGGCGGCgc -5'
10995 5' -54 NC_002794.1 + 128538 0.66 0.965558
Target:  5'- --uGGAcGGUCGGguGCGCCGuCCuGCu -3'
miRNA:   3'- cauUCUaCUAGUCguCGUGGC-GG-CGc -5'
10995 5' -54 NC_002794.1 + 192865 0.66 0.965558
Target:  5'- ------cGAaccagCGGCAGCACaGCCGCGa -3'
miRNA:   3'- cauucuaCUa----GUCGUCGUGgCGGCGC- -5'
10995 5' -54 NC_002794.1 + 63466 0.66 0.962202
Target:  5'- ---cGAUGAcgacgaGGCGGCgGCCGCCGuCGa -3'
miRNA:   3'- cauuCUACUag----UCGUCG-UGGCGGC-GC- -5'
10995 5' -54 NC_002794.1 + 151040 0.66 0.962202
Target:  5'- cGUcuGAUGAcgGGCGaguGCACgGCCGCGc -3'
miRNA:   3'- -CAuuCUACUagUCGU---CGUGgCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.