miRNA display CGI


Results 1 - 20 of 266 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11000 3' -64 NC_002794.1 + 194018 0.66 0.658134
Target:  5'- gCGGCCgccgcCGcCGGCGCcucGCCCGcCGCCGc -3'
miRNA:   3'- gGCCGG-----GCaGUCGUGc--CGGGC-GUGGU- -5'
11000 3' -64 NC_002794.1 + 53315 0.66 0.658134
Target:  5'- gCCGGCgCCGcgagaUCGGCuCGaaCCGCACCu -3'
miRNA:   3'- -GGCCG-GGC-----AGUCGuGCcgGGCGUGGu -5'
11000 3' -64 NC_002794.1 + 67392 0.66 0.658134
Target:  5'- gUCGGCgCCagcGUCGGCGCcagcGUCgGCGCCAg -3'
miRNA:   3'- -GGCCG-GG---CAGUCGUGc---CGGgCGUGGU- -5'
11000 3' -64 NC_002794.1 + 112840 0.66 0.658134
Target:  5'- aCGGCUgcuCGUCGGCGCG--CCGCAgCAg -3'
miRNA:   3'- gGCCGG---GCAGUCGUGCcgGGCGUgGU- -5'
11000 3' -64 NC_002794.1 + 80502 0.66 0.658134
Target:  5'- aCCGGCaCGUCuucugcgccgcGGCGCGcgacGCCUGgCACCGg -3'
miRNA:   3'- -GGCCGgGCAG-----------UCGUGC----CGGGC-GUGGU- -5'
11000 3' -64 NC_002794.1 + 64113 0.66 0.658134
Target:  5'- aCCGGCgCGUCuGCACgcggucgacgGGCUggUGCugCAg -3'
miRNA:   3'- -GGCCGgGCAGuCGUG----------CCGG--GCGugGU- -5'
11000 3' -64 NC_002794.1 + 183506 0.66 0.658134
Target:  5'- cCCGGCCCcgagaccCAuGuCGCGGCCgugCGCGCCc -3'
miRNA:   3'- -GGCCGGGca-----GU-C-GUGCCGG---GCGUGGu -5'
11000 3' -64 NC_002794.1 + 53072 0.66 0.64866
Target:  5'- gCC-GCgCCGcCAGCucGCGGCaCCGgGCCAa -3'
miRNA:   3'- -GGcCG-GGCaGUCG--UGCCG-GGCgUGGU- -5'
11000 3' -64 NC_002794.1 + 115926 0.66 0.64866
Target:  5'- uUGGCgCGgCGGCGggcCGGCCCGCcgcgugucGCCGg -3'
miRNA:   3'- gGCCGgGCaGUCGU---GCCGGGCG--------UGGU- -5'
11000 3' -64 NC_002794.1 + 107188 0.66 0.64866
Target:  5'- gCCGGCgCCGcCGccGC-CGGCCuCGC-CCGg -3'
miRNA:   3'- -GGCCG-GGCaGU--CGuGCCGG-GCGuGGU- -5'
11000 3' -64 NC_002794.1 + 21973 0.66 0.64866
Target:  5'- gCGGCgCCGUCGucucCGCGaCCCGuCGCCGg -3'
miRNA:   3'- gGCCG-GGCAGUc---GUGCcGGGC-GUGGU- -5'
11000 3' -64 NC_002794.1 + 100327 0.66 0.64866
Target:  5'- gCGGCCgG-C-GCACGGCCgGCucucgACCGc -3'
miRNA:   3'- gGCCGGgCaGuCGUGCCGGgCG-----UGGU- -5'
11000 3' -64 NC_002794.1 + 149984 0.66 0.64866
Target:  5'- aCCGGCggCCGcuaUCuGCcgcgcugcuacgACGGCCCGCuCCGa -3'
miRNA:   3'- -GGCCG--GGC---AGuCG------------UGCCGGGCGuGGU- -5'
11000 3' -64 NC_002794.1 + 43993 0.66 0.647712
Target:  5'- gCCGGaCgUGUgggagcaCGGCGCGGCCgGCGuCCGc -3'
miRNA:   3'- -GGCC-GgGCA-------GUCGUGCCGGgCGU-GGU- -5'
11000 3' -64 NC_002794.1 + 70774 0.66 0.639175
Target:  5'- aCGGUgaCCGUCucguCGcGCCCGUACCAc -3'
miRNA:   3'- gGCCG--GGCAGucguGC-CGGGCGUGGU- -5'
11000 3' -64 NC_002794.1 + 96744 0.66 0.639175
Target:  5'- gCCGGCgCGUCucGCaaGCGGCCgGCGg-- -3'
miRNA:   3'- -GGCCGgGCAGu-CG--UGCCGGgCGUggu -5'
11000 3' -64 NC_002794.1 + 103094 0.66 0.639175
Target:  5'- gCGGCCCG-CGcGCGCGGUCaCGacucCCAa -3'
miRNA:   3'- gGCCGGGCaGU-CGUGCCGG-GCgu--GGU- -5'
11000 3' -64 NC_002794.1 + 186120 0.66 0.639175
Target:  5'- gCCGGgucCCCGgaucucCAGCACGGCCgucaCGCCu -3'
miRNA:   3'- -GGCC---GGGCa-----GUCGUGCCGGgc--GUGGu -5'
11000 3' -64 NC_002794.1 + 179227 0.66 0.639175
Target:  5'- gUGGCCCagaugcaacagGUCGGCGuCGGCgagaCCGcCGCCGa -3'
miRNA:   3'- gGCCGGG-----------CAGUCGU-GCCG----GGC-GUGGU- -5'
11000 3' -64 NC_002794.1 + 50578 0.66 0.639175
Target:  5'- aCGGCgUGcgCGGCGgcugggUGGCCgGCGCCGg -3'
miRNA:   3'- gGCCGgGCa-GUCGU------GCCGGgCGUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.