miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11000 3' -64 NC_002794.1 + 80451 0.85 0.04622
Target:  5'- gCCGGCCCGUCGGC--GGCCCGCugCc -3'
miRNA:   3'- -GGCCGGGCAGUCGugCCGGGCGugGu -5'
11000 3' -64 NC_002794.1 + 190929 0.85 0.04622
Target:  5'- cCCGGCCCGcagccggUAGCACGGCCCcagcaGCACCAg -3'
miRNA:   3'- -GGCCGGGCa------GUCGUGCCGGG-----CGUGGU- -5'
11000 3' -64 NC_002794.1 + 131391 0.78 0.127399
Target:  5'- gCCGcGCCCGUCAuCACGGCCUcgcccgugaucgGCACCGg -3'
miRNA:   3'- -GGC-CGGGCAGUcGUGCCGGG------------CGUGGU- -5'
11000 3' -64 NC_002794.1 + 131535 0.78 0.130501
Target:  5'- gCCgGGCCCGUCAuCACGGCCuCGC-CCGu -3'
miRNA:   3'- -GG-CCGGGCAGUcGUGCCGG-GCGuGGU- -5'
11000 3' -64 NC_002794.1 + 112204 0.78 0.136916
Target:  5'- gUCuGCCCGUgGaGCACGGCCCGCuCCAg -3'
miRNA:   3'- -GGcCGGGCAgU-CGUGCCGGGCGuGGU- -5'
11000 3' -64 NC_002794.1 + 26658 0.77 0.143619
Target:  5'- gCCGGCUCGUCGGCGgGGUggaGCGCCAc -3'
miRNA:   3'- -GGCCGGGCAGUCGUgCCGgg-CGUGGU- -5'
11000 3' -64 NC_002794.1 + 185196 0.76 0.169498
Target:  5'- gUCGGCgCgGUCAuCGCGGCUCGCGCCGc -3'
miRNA:   3'- -GGCCG-GgCAGUcGUGCCGGGCGUGGU- -5'
11000 3' -64 NC_002794.1 + 90965 0.76 0.173519
Target:  5'- cCCgGGCCCGcuUCGGCGUGGCCuCGUACCGg -3'
miRNA:   3'- -GG-CCGGGC--AGUCGUGCCGG-GCGUGGU- -5'
11000 3' -64 NC_002794.1 + 59051 0.76 0.186097
Target:  5'- aCCGcGCCUG-CGGcCugGGCCUGCACCu -3'
miRNA:   3'- -GGC-CGGGCaGUC-GugCCGGGCGUGGu -5'
11000 3' -64 NC_002794.1 + 34755 0.76 0.186097
Target:  5'- aCGGCgCGgugggacgCGGCACGgccGCCCGCGCCAg -3'
miRNA:   3'- gGCCGgGCa-------GUCGUGC---CGGGCGUGGU- -5'
11000 3' -64 NC_002794.1 + 108459 0.75 0.204113
Target:  5'- gCGGCCCGcCGGCACGGgCCGaggggcgACCGg -3'
miRNA:   3'- gGCCGGGCaGUCGUGCCgGGCg------UGGU- -5'
11000 3' -64 NC_002794.1 + 189562 0.75 0.208847
Target:  5'- gCGGUCCcgcucgGUCGGC-CGGCCCGgGCCGg -3'
miRNA:   3'- gGCCGGG------CAGUCGuGCCGGGCgUGGU- -5'
11000 3' -64 NC_002794.1 + 34082 0.75 0.208847
Target:  5'- gCCGGCggccgggcagCCGUCGG-GCGGCCCGgACCGc -3'
miRNA:   3'- -GGCCG----------GGCAGUCgUGCCGGGCgUGGU- -5'
11000 3' -64 NC_002794.1 + 115137 0.75 0.208847
Target:  5'- gUCGGUCggguggagGUCGGuCACGGUCCGCACCAg -3'
miRNA:   3'- -GGCCGGg-------CAGUC-GUGCCGGGCGUGGU- -5'
11000 3' -64 NC_002794.1 + 157051 0.75 0.208847
Target:  5'- uCCGGCgagaCCGUCgcggAGCAUGGCCC-CGCCGa -3'
miRNA:   3'- -GGCCG----GGCAG----UCGUGCCGGGcGUGGU- -5'
11000 3' -64 NC_002794.1 + 51267 0.75 0.213676
Target:  5'- gCGGgCCGggaggcaGGCGCGGCCCGC-CCGa -3'
miRNA:   3'- gGCCgGGCag-----UCGUGCCGGGCGuGGU- -5'
11000 3' -64 NC_002794.1 + 187041 0.75 0.2186
Target:  5'- aCCGGCUCG-CAGUcccggagcccGCGGCCCGCcagguGCCGc -3'
miRNA:   3'- -GGCCGGGCaGUCG----------UGCCGGGCG-----UGGU- -5'
11000 3' -64 NC_002794.1 + 37669 0.74 0.228223
Target:  5'- gCGuuCCGUacuucucCAGCACGGUCCGCGCCGu -3'
miRNA:   3'- gGCcgGGCA-------GUCGUGCCGGGCGUGGU- -5'
11000 3' -64 NC_002794.1 + 77713 0.74 0.228223
Target:  5'- gCGGCCUGcuccUCaacccucucaucuGGC-CGGCCCGCACCAu -3'
miRNA:   3'- gGCCGGGC----AG-------------UCGuGCCGGGCGUGGU- -5'
11000 3' -64 NC_002794.1 + 189884 0.74 0.228223
Target:  5'- aCCGGCCCGcucgggcccgccgUCAGCGCcGCCgCGCgACCGc -3'
miRNA:   3'- -GGCCGGGC-------------AGUCGUGcCGG-GCG-UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.