miRNA display CGI


Results 21 - 40 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11000 3' -64 NC_002794.1 + 180266 0.74 0.22874
Target:  5'- uCCGcuucGCCgGUCuccuCGCGGCCCGCGCCGc -3'
miRNA:   3'- -GGC----CGGgCAGuc--GUGCCGGGCGUGGU- -5'
11000 3' -64 NC_002794.1 + 82947 0.74 0.22874
Target:  5'- uCCaGGCCCGcCGcGCACGGCgCGCACgCGa -3'
miRNA:   3'- -GG-CCGGGCaGU-CGUGCCGgGCGUG-GU- -5'
11000 3' -64 NC_002794.1 + 192682 0.74 0.239274
Target:  5'- gCCGGCcgCCGUC-GUACGucuucagcaGCCCGCACCGa -3'
miRNA:   3'- -GGCCG--GGCAGuCGUGC---------CGGGCGUGGU- -5'
11000 3' -64 NC_002794.1 + 44707 0.74 0.239274
Target:  5'- cCCGGCCgCGaccgCGGCGacguCGGCCgGCGCCGc -3'
miRNA:   3'- -GGCCGG-GCa---GUCGU----GCCGGgCGUGGU- -5'
11000 3' -64 NC_002794.1 + 193145 0.74 0.244145
Target:  5'- cUCGuGCCCGUacagcgccuccagCAGCACcaGCCCGCGCCGc -3'
miRNA:   3'- -GGC-CGGGCA-------------GUCGUGc-CGGGCGUGGU- -5'
11000 3' -64 NC_002794.1 + 113888 0.74 0.244691
Target:  5'- gCGGCgCgCGUCGGCGCGGUCUGCAggaaggccuCCAg -3'
miRNA:   3'- gGCCG-G-GCAGUCGUGCCGGGCGU---------GGU- -5'
11000 3' -64 NC_002794.1 + 16340 0.74 0.244691
Target:  5'- gCCGGCaccgacgaCGUCGGCGCcaCCCGCACCc -3'
miRNA:   3'- -GGCCGg-------GCAGUCGUGccGGGCGUGGu -5'
11000 3' -64 NC_002794.1 + 194974 0.74 0.244691
Target:  5'- gCCGGCUCGUacaGGCACaGCgCCGCGCgCAc -3'
miRNA:   3'- -GGCCGGGCAg--UCGUGcCG-GGCGUG-GU- -5'
11000 3' -64 NC_002794.1 + 60925 0.74 0.250211
Target:  5'- aUCGGCCacaCGGCcauCGGCCUGCACCGc -3'
miRNA:   3'- -GGCCGGgcaGUCGu--GCCGGGCGUGGU- -5'
11000 3' -64 NC_002794.1 + 84182 0.73 0.255832
Target:  5'- cUCGGCCCGgc-GCuCGGCCCGCcucccACCAc -3'
miRNA:   3'- -GGCCGGGCaguCGuGCCGGGCG-----UGGU- -5'
11000 3' -64 NC_002794.1 + 60639 0.73 0.267385
Target:  5'- cCCGGCgCCGgCGGCGcCGGCCacccggcgCGCGCCGc -3'
miRNA:   3'- -GGCCG-GGCaGUCGU-GCCGG--------GCGUGGU- -5'
11000 3' -64 NC_002794.1 + 194507 0.73 0.267385
Target:  5'- cCCGGCCCG-CGGCccgcgugccgcCGGCCCagcaGCGCCGc -3'
miRNA:   3'- -GGCCGGGCaGUCGu----------GCCGGG----CGUGGU- -5'
11000 3' -64 NC_002794.1 + 121380 0.73 0.273317
Target:  5'- gCCGGCcgCCGcCGGgacCGCGGCCgGCGCCGg -3'
miRNA:   3'- -GGCCG--GGCaGUC---GUGCCGGgCGUGGU- -5'
11000 3' -64 NC_002794.1 + 89911 0.73 0.273317
Target:  5'- aUCGGCCCGUUGGCGCuagaGGCgCggGCGCCGg -3'
miRNA:   3'- -GGCCGGGCAGUCGUG----CCGgG--CGUGGU- -5'
11000 3' -64 NC_002794.1 + 16734 0.73 0.279355
Target:  5'- gCCGGCuCCGUCccaucuuGC-CGGCCC-CACCGa -3'
miRNA:   3'- -GGCCG-GGCAGu------CGuGCCGGGcGUGGU- -5'
11000 3' -64 NC_002794.1 + 34805 0.72 0.291119
Target:  5'- aCCGGCCCGggCcGCGCGacaccacccccucGCCgGCGCCGg -3'
miRNA:   3'- -GGCCGGGCa-GuCGUGC-------------CGGgCGUGGU- -5'
11000 3' -64 NC_002794.1 + 122153 0.72 0.296187
Target:  5'- gCCGGCCgUGUCcgacuaccuggccgAGCACGGCgCGCGCg- -3'
miRNA:   3'- -GGCCGG-GCAG--------------UCGUGCCGgGCGUGgu -5'
11000 3' -64 NC_002794.1 + 14480 0.72 0.298105
Target:  5'- gCCGcGCUCGcuguucgCGGCgGCGGCCCGCGCUc -3'
miRNA:   3'- -GGC-CGGGCa------GUCG-UGCCGGGCGUGGu -5'
11000 3' -64 NC_002794.1 + 184495 0.72 0.304568
Target:  5'- cCCGgacGCCCGggCGGCGCGGgcCCCGCGCgCGg -3'
miRNA:   3'- -GGC---CGGGCa-GUCGUGCC--GGGCGUG-GU- -5'
11000 3' -64 NC_002794.1 + 113650 0.72 0.307183
Target:  5'- gCGGCCCGgcguccucggcgucCAGCGCggcgagcaGGCCCGcCACCGu -3'
miRNA:   3'- gGCCGGGCa-------------GUCGUG--------CCGGGC-GUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.