miRNA display CGI


Results 21 - 40 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11000 3' -64 NC_002794.1 + 61820 0.66 0.639175
Target:  5'- uCCGGCggCCGcCGGCGgcCGGCgucacuccgcuCCGCGCCc -3'
miRNA:   3'- -GGCCG--GGCaGUCGU--GCCG-----------GGCGUGGu -5'
11000 3' -64 NC_002794.1 + 50578 0.66 0.639175
Target:  5'- aCGGCgUGcgCGGCGgcugggUGGCCgGCGCCGg -3'
miRNA:   3'- gGCCGgGCa-GUCGU------GCCGGgCGUGGU- -5'
11000 3' -64 NC_002794.1 + 70774 0.66 0.639175
Target:  5'- aCGGUgaCCGUCucguCGcGCCCGUACCAc -3'
miRNA:   3'- gGCCG--GGCAGucguGC-CGGGCGUGGU- -5'
11000 3' -64 NC_002794.1 + 96744 0.66 0.639175
Target:  5'- gCCGGCgCGUCucGCaaGCGGCCgGCGg-- -3'
miRNA:   3'- -GGCCGgGCAGu-CG--UGCCGGgCGUggu -5'
11000 3' -64 NC_002794.1 + 103094 0.66 0.639175
Target:  5'- gCGGCCCG-CGcGCGCGGUCaCGacucCCAa -3'
miRNA:   3'- gGCCGGGCaGU-CGUGCCGG-GCgu--GGU- -5'
11000 3' -64 NC_002794.1 + 186120 0.66 0.639175
Target:  5'- gCCGGgucCCCGgaucucCAGCACGGCCgucaCGCCu -3'
miRNA:   3'- -GGCC---GGGCa-----GUCGUGCCGGgc--GUGGu -5'
11000 3' -64 NC_002794.1 + 179227 0.66 0.639175
Target:  5'- gUGGCCCagaugcaacagGUCGGCGuCGGCgagaCCGcCGCCGa -3'
miRNA:   3'- gGCCGGG-----------CAGUCGU-GCCG----GGC-GUGGU- -5'
11000 3' -64 NC_002794.1 + 34321 0.66 0.639175
Target:  5'- cCCGGgaggCCGUCcgcaaGGCgACGG-CCGCGCCGu -3'
miRNA:   3'- -GGCCg---GGCAG-----UCG-UGCCgGGCGUGGU- -5'
11000 3' -64 NC_002794.1 + 15262 0.66 0.638226
Target:  5'- uUCGGaCCGUCGGCgagccgcGCGGCucccuCCGCGCgAg -3'
miRNA:   3'- -GGCCgGGCAGUCG-------UGCCG-----GGCGUGgU- -5'
11000 3' -64 NC_002794.1 + 34389 0.66 0.638226
Target:  5'- gUGGCCaacagcuucuucuCG-CAGUACGuGCCCGaCACCGc -3'
miRNA:   3'- gGCCGG-------------GCaGUCGUGC-CGGGC-GUGGU- -5'
11000 3' -64 NC_002794.1 + 94003 0.66 0.638226
Target:  5'- gCCGGCgCCGgCGGCG-GGCCgGCggguuccGCCGg -3'
miRNA:   3'- -GGCCG-GGCaGUCGUgCCGGgCG-------UGGU- -5'
11000 3' -64 NC_002794.1 + 128019 0.66 0.636328
Target:  5'- gCCGcCCCGUCGGCugacaccccGCgGGCCaccgaucaccgcguCGCACCGa -3'
miRNA:   3'- -GGCcGGGCAGUCG---------UG-CCGG--------------GCGUGGU- -5'
11000 3' -64 NC_002794.1 + 140 0.66 0.633481
Target:  5'- cCCGGgaCCGccgcaggggcgcacCAGCAC-GCCCGCGCCc -3'
miRNA:   3'- -GGCCg-GGCa-------------GUCGUGcCGGGCGUGGu -5'
11000 3' -64 NC_002794.1 + 120743 0.66 0.629685
Target:  5'- gCGGUCCGggAGCGCagacucugcuGGCCCuGCugCGa -3'
miRNA:   3'- gGCCGGGCagUCGUG----------CCGGG-CGugGU- -5'
11000 3' -64 NC_002794.1 + 12026 0.66 0.629685
Target:  5'- gCCGGCCCG--GGC---GUCCGCGCCu -3'
miRNA:   3'- -GGCCGGGCagUCGugcCGGGCGUGGu -5'
11000 3' -64 NC_002794.1 + 53714 0.66 0.629685
Target:  5'- aCUcGCCC-UCGGggUGGaCCCGCGCCAu -3'
miRNA:   3'- -GGcCGGGcAGUCguGCC-GGGCGUGGU- -5'
11000 3' -64 NC_002794.1 + 49394 0.66 0.629685
Target:  5'- gCCGcCgCCGUCGGcCACGGCggCCGCGgCGg -3'
miRNA:   3'- -GGCcG-GGCAGUC-GUGCCG--GGCGUgGU- -5'
11000 3' -64 NC_002794.1 + 184240 0.66 0.628735
Target:  5'- cCCGGCCCa--GGCucCGGCCCagaucccGUGCCGc -3'
miRNA:   3'- -GGCCGGGcagUCGu-GCCGGG-------CGUGGU- -5'
11000 3' -64 NC_002794.1 + 101248 0.66 0.628735
Target:  5'- uCCGGCgCG-CAGCGgGGggccgccCCCgGCGCCGg -3'
miRNA:   3'- -GGCCGgGCaGUCGUgCC-------GGG-CGUGGU- -5'
11000 3' -64 NC_002794.1 + 13132 0.66 0.620196
Target:  5'- gCGGCUCGcUC-GCGCGGgUCGuCGCCGu -3'
miRNA:   3'- gGCCGGGC-AGuCGUGCCgGGC-GUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.