miRNA display CGI


Results 41 - 60 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11000 3' -64 NC_002794.1 + 82358 0.66 0.620196
Target:  5'- -aGcGCCCGUCcuCGCcGCCCGaCACCGc -3'
miRNA:   3'- ggC-CGGGCAGucGUGcCGGGC-GUGGU- -5'
11000 3' -64 NC_002794.1 + 64327 0.66 0.620196
Target:  5'- cCCGGgCCGUUuu--UGGCCCcGCACCc -3'
miRNA:   3'- -GGCCgGGCAGucguGCCGGG-CGUGGu -5'
11000 3' -64 NC_002794.1 + 44431 0.66 0.620196
Target:  5'- gCGGCUCGacgacacCGGCGC-GCCCGC-CCGg -3'
miRNA:   3'- gGCCGGGCa------GUCGUGcCGGGCGuGGU- -5'
11000 3' -64 NC_002794.1 + 100833 0.66 0.620196
Target:  5'- -gGGCCgG-CAGC-CGGgcuUCCGCACCGc -3'
miRNA:   3'- ggCCGGgCaGUCGuGCC---GGGCGUGGU- -5'
11000 3' -64 NC_002794.1 + 13132 0.66 0.620196
Target:  5'- gCGGCUCGcUC-GCGCGGgUCGuCGCCGu -3'
miRNA:   3'- gGCCGGGC-AGuCGUGCCgGGC-GUGGU- -5'
11000 3' -64 NC_002794.1 + 71225 0.66 0.620196
Target:  5'- cCCGGCCgCGUaguggCGGC-CGGCgUGgACCGg -3'
miRNA:   3'- -GGCCGG-GCA-----GUCGuGCCGgGCgUGGU- -5'
11000 3' -64 NC_002794.1 + 32093 0.66 0.619248
Target:  5'- aCGGCgUG-CAGCAUGuaccggagcaucaGCCCGCACUc -3'
miRNA:   3'- gGCCGgGCaGUCGUGC-------------CGGGCGUGGu -5'
11000 3' -64 NC_002794.1 + 84757 0.66 0.619248
Target:  5'- aCCGGCCgcgagagggcCGUCcgaGGCcCGGCCCGgcucucucucgccCACCGu -3'
miRNA:   3'- -GGCCGG----------GCAG---UCGuGCCGGGC-------------GUGGU- -5'
11000 3' -64 NC_002794.1 + 19475 0.66 0.610715
Target:  5'- gCgGGaCCCGcCGGUc--GCCCGCACCGa -3'
miRNA:   3'- -GgCC-GGGCaGUCGugcCGGGCGUGGU- -5'
11000 3' -64 NC_002794.1 + 107256 0.66 0.610715
Target:  5'- cCUGGCCCGgcggagCcGCGCcGUCCGcCGCCGu -3'
miRNA:   3'- -GGCCGGGCa-----GuCGUGcCGGGC-GUGGU- -5'
11000 3' -64 NC_002794.1 + 21881 0.66 0.610715
Target:  5'- gCCGGCCgCGg-GGUguccGCGGCCUGCGUCGg -3'
miRNA:   3'- -GGCCGG-GCagUCG----UGCCGGGCGUGGU- -5'
11000 3' -64 NC_002794.1 + 182195 0.66 0.610715
Target:  5'- -gGGCC--UCGGCGcCGGCgUCGCGCCAc -3'
miRNA:   3'- ggCCGGgcAGUCGU-GCCG-GGCGUGGU- -5'
11000 3' -64 NC_002794.1 + 131430 0.66 0.610715
Target:  5'- -gGGCCCGUCAuCACGaCCuCGC-CCGu -3'
miRNA:   3'- ggCCGGGCAGUcGUGCcGG-GCGuGGU- -5'
11000 3' -64 NC_002794.1 + 1013 0.66 0.610715
Target:  5'- --cGCCUuUUccuGGCAucCGGCCCGCACCAc -3'
miRNA:   3'- ggcCGGGcAG---UCGU--GCCGGGCGUGGU- -5'
11000 3' -64 NC_002794.1 + 188685 0.66 0.610715
Target:  5'- gUCGGCCaCG-CGGUACaGCUCGC-CCGu -3'
miRNA:   3'- -GGCCGG-GCaGUCGUGcCGGGCGuGGU- -5'
11000 3' -64 NC_002794.1 + 121980 0.66 0.610715
Target:  5'- cUCGGuCCCGcCgAGCGCGGCCgggaGCuguuCCAc -3'
miRNA:   3'- -GGCC-GGGCaG-UCGUGCCGGg---CGu---GGU- -5'
11000 3' -64 NC_002794.1 + 53524 0.66 0.610715
Target:  5'- aUGGagaagCCGUgGGCGCGGCggCCGCACa- -3'
miRNA:   3'- gGCCg----GGCAgUCGUGCCG--GGCGUGgu -5'
11000 3' -64 NC_002794.1 + 22933 0.66 0.609768
Target:  5'- aCCGGCaCCcaUCGGCugGccgacggGCCgGCGCCGu -3'
miRNA:   3'- -GGCCG-GGc-AGUCGugC-------CGGgCGUGGU- -5'
11000 3' -64 NC_002794.1 + 150317 0.67 0.605033
Target:  5'- aCCGGCCgCGUCuacgugcaguggacGCACGGCUgucugcucguCGCgGCCGa -3'
miRNA:   3'- -GGCCGG-GCAGu-------------CGUGCCGG----------GCG-UGGU- -5'
11000 3' -64 NC_002794.1 + 151028 0.67 0.602194
Target:  5'- cCCGuggucGCCCGUCugaugacgggcgaguGCACGGCCgCGCAg-- -3'
miRNA:   3'- -GGC-----CGGGCAGu--------------CGUGCCGG-GCGUggu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.