miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11000 3' -64 NC_002794.1 + 140 0.66 0.633481
Target:  5'- cCCGGgaCCGccgcaggggcgcacCAGCAC-GCCCGCGCCc -3'
miRNA:   3'- -GGCCg-GGCa-------------GUCGUGcCGGGCGUGGu -5'
11000 3' -64 NC_002794.1 + 288 0.67 0.572988
Target:  5'- gCGGCCCu--GGCGCgccgaacgccgGGCCCGCcCCAc -3'
miRNA:   3'- gGCCGGGcagUCGUG-----------CCGGGCGuGGU- -5'
11000 3' -64 NC_002794.1 + 766 0.68 0.517568
Target:  5'- gCCgGGCCCGcggugcauUUGGCACGGUgccaaCCGUGCCGu -3'
miRNA:   3'- -GG-CCGGGC--------AGUCGUGCCG-----GGCGUGGU- -5'
11000 3' -64 NC_002794.1 + 842 0.7 0.382705
Target:  5'- cCCGGCgCGUgcguucggccCAGCGCGcGCCCGCGa-- -3'
miRNA:   3'- -GGCCGgGCA----------GUCGUGC-CGGGCGUggu -5'
11000 3' -64 NC_002794.1 + 1013 0.66 0.610715
Target:  5'- --cGCCUuUUccuGGCAucCGGCCCGCACCAc -3'
miRNA:   3'- ggcCGGGcAG---UCGU--GCCGGGCGUGGU- -5'
11000 3' -64 NC_002794.1 + 2098 0.68 0.517568
Target:  5'- aCGGCgaCCGg-GGCguguucuaucuACGGUCCGCGCCAa -3'
miRNA:   3'- gGCCG--GGCagUCG-----------UGCCGGGCGUGGU- -5'
11000 3' -64 NC_002794.1 + 11652 0.67 0.554319
Target:  5'- gCGG-CCGaCGaCGCGGCCCGCcgGCCAc -3'
miRNA:   3'- gGCCgGGCaGUcGUGCCGGGCG--UGGU- -5'
11000 3' -64 NC_002794.1 + 12026 0.66 0.629685
Target:  5'- gCCGGCCCG--GGC---GUCCGCGCCu -3'
miRNA:   3'- -GGCCGGGCagUCGugcCGGGCGUGGu -5'
11000 3' -64 NC_002794.1 + 12230 0.68 0.535833
Target:  5'- gCGGCgCCGgCGGCGCcGUCCGCggcGCCGa -3'
miRNA:   3'- gGCCG-GGCaGUCGUGcCGGGCG---UGGU- -5'
11000 3' -64 NC_002794.1 + 12305 0.67 0.563633
Target:  5'- aCgGGCCCG-CGGgacuccucCGCGGUCCGCgugACCGu -3'
miRNA:   3'- -GgCCGGGCaGUC--------GUGCCGGGCG---UGGU- -5'
11000 3' -64 NC_002794.1 + 12729 0.67 0.563633
Target:  5'- gCGGCgaCGagGGCcCGGUCCGCuACCAg -3'
miRNA:   3'- gGCCGg-GCagUCGuGCCGGGCG-UGGU- -5'
11000 3' -64 NC_002794.1 + 13132 0.66 0.620196
Target:  5'- gCGGCUCGcUC-GCGCGGgUCGuCGCCGu -3'
miRNA:   3'- gGCCGGGC-AGuCGUGCCgGGC-GUGGU- -5'
11000 3' -64 NC_002794.1 + 14147 0.67 0.591801
Target:  5'- uCCGGUCCGUCGu--CGaGCCC-CGCCGc -3'
miRNA:   3'- -GGCCGGGCAGUcguGC-CGGGcGUGGU- -5'
11000 3' -64 NC_002794.1 + 14178 0.69 0.446482
Target:  5'- cCUGcGCCuccgagaCGUCAGCGuccCGGCCCGCugGCCGc -3'
miRNA:   3'- -GGC-CGG-------GCAGUCGU---GCCGGGCG--UGGU- -5'
11000 3' -64 NC_002794.1 + 14480 0.72 0.298105
Target:  5'- gCCGcGCUCGcuguucgCGGCgGCGGCCCGCGCUc -3'
miRNA:   3'- -GGC-CGGGCa------GUCG-UGCCGGGCGUGGu -5'
11000 3' -64 NC_002794.1 + 14653 0.67 0.591801
Target:  5'- gCCGGCgCCG-CGGCGuCGGUCCG-ACUc -3'
miRNA:   3'- -GGCCG-GGCaGUCGU-GCCGGGCgUGGu -5'
11000 3' -64 NC_002794.1 + 15262 0.66 0.638226
Target:  5'- uUCGGaCCGUCGGCgagccgcGCGGCucccuCCGCGCgAg -3'
miRNA:   3'- -GGCCgGGCAGUCG-------UGCCG-----GGCGUGgU- -5'
11000 3' -64 NC_002794.1 + 16340 0.74 0.244691
Target:  5'- gCCGGCaccgacgaCGUCGGCGCcaCCCGCACCc -3'
miRNA:   3'- -GGCCGg-------GCAGUCGUGccGGGCGUGGu -5'
11000 3' -64 NC_002794.1 + 16734 0.73 0.279355
Target:  5'- gCCGGCuCCGUCccaucuuGC-CGGCCC-CACCGa -3'
miRNA:   3'- -GGCCG-GGCAGu------CGuGCCGGGcGUGGU- -5'
11000 3' -64 NC_002794.1 + 17265 0.67 0.554319
Target:  5'- cCCGGCUCGUCacccgGGCACG--CCGcCGCCGa -3'
miRNA:   3'- -GGCCGGGCAG-----UCGUGCcgGGC-GUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.