miRNA display CGI


Results 21 - 40 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11000 3' -64 NC_002794.1 + 17428 0.68 0.507628
Target:  5'- gCGGUcuccgcgCCGcCGGCGCucgGGCCCGCgACCGa -3'
miRNA:   3'- gGCCG-------GGCaGUCGUG---CCGGGCG-UGGU- -5'
11000 3' -64 NC_002794.1 + 18807 0.72 0.317815
Target:  5'- gCCGGCCaacggGUCGGCGaccuCGGCCgGCGCgGa -3'
miRNA:   3'- -GGCCGGg----CAGUCGU----GCCGGgCGUGgU- -5'
11000 3' -64 NC_002794.1 + 19475 0.66 0.610715
Target:  5'- gCgGGaCCCGcCGGUc--GCCCGCACCGa -3'
miRNA:   3'- -GgCC-GGGCaGUCGugcCGGGCGUGGU- -5'
11000 3' -64 NC_002794.1 + 19522 0.7 0.406208
Target:  5'- cUCGGagcgCCGgcgCGGCGCGGCCCGCcggugucggACCc -3'
miRNA:   3'- -GGCCg---GGCa--GUCGUGCCGGGCG---------UGGu -5'
11000 3' -64 NC_002794.1 + 19595 0.68 0.517568
Target:  5'- uCCGGCCCGgcga-GCGGCCgaGcCACCGa -3'
miRNA:   3'- -GGCCGGGCagucgUGCCGGg-C-GUGGU- -5'
11000 3' -64 NC_002794.1 + 21881 0.66 0.610715
Target:  5'- gCCGGCCgCGg-GGUguccGCGGCCUGCGUCGg -3'
miRNA:   3'- -GGCCGG-GCagUCG----UGCCGGGCGUGGU- -5'
11000 3' -64 NC_002794.1 + 21973 0.66 0.64866
Target:  5'- gCGGCgCCGUCGucucCGCGaCCCGuCGCCGg -3'
miRNA:   3'- gGCCG-GGCAGUc---GUGCcGGGC-GUGGU- -5'
11000 3' -64 NC_002794.1 + 22547 0.68 0.530329
Target:  5'- uCCGGaCCGUCcgccaccgccgacacGGCACGGCC-GCuguCCAa -3'
miRNA:   3'- -GGCCgGGCAG---------------UCGUGCCGGgCGu--GGU- -5'
11000 3' -64 NC_002794.1 + 22933 0.66 0.609768
Target:  5'- aCCGGCaCCcaUCGGCugGccgacggGCCgGCGCCGu -3'
miRNA:   3'- -GGCCG-GGc-AGUCGugC-------CGGgCGUGGU- -5'
11000 3' -64 NC_002794.1 + 23966 0.69 0.481828
Target:  5'- uCCGaGCCag-CGGCGaGGCCgGCGCCAc -3'
miRNA:   3'- -GGC-CGGgcaGUCGUgCCGGgCGUGGU- -5'
11000 3' -64 NC_002794.1 + 26658 0.77 0.143619
Target:  5'- gCCGGCUCGUCGGCGgGGUggaGCGCCAc -3'
miRNA:   3'- -GGCCGGGCAGUCGUgCCGgg-CGUGGU- -5'
11000 3' -64 NC_002794.1 + 29745 0.67 0.591801
Target:  5'- cUCGGaCCG--GGCGcCGaGCCCGCGCCGa -3'
miRNA:   3'- -GGCCgGGCagUCGU-GC-CGGGCGUGGU- -5'
11000 3' -64 NC_002794.1 + 30836 0.69 0.447327
Target:  5'- uCUGGCUgGUCGGCGgaGGCUucgCGUACCAg -3'
miRNA:   3'- -GGCCGGgCAGUCGUg-CCGG---GCGUGGU- -5'
11000 3' -64 NC_002794.1 + 32093 0.66 0.619248
Target:  5'- aCGGCgUG-CAGCAUGuaccggagcaucaGCCCGCACUc -3'
miRNA:   3'- gGCCGgGCaGUCGUGC-------------CGGGCGUGGu -5'
11000 3' -64 NC_002794.1 + 34054 0.68 0.490655
Target:  5'- gCCGGCCCG-C-GCACGaCCCGCcguuCCc -3'
miRNA:   3'- -GGCCGGGCaGuCGUGCcGGGCGu---GGu -5'
11000 3' -64 NC_002794.1 + 34082 0.75 0.208847
Target:  5'- gCCGGCggccgggcagCCGUCGG-GCGGCCCGgACCGc -3'
miRNA:   3'- -GGCCG----------GGCAGUCgUGCCGGGCgUGGU- -5'
11000 3' -64 NC_002794.1 + 34321 0.66 0.639175
Target:  5'- cCCGGgaggCCGUCcgcaaGGCgACGG-CCGCGCCGu -3'
miRNA:   3'- -GGCCg---GGCAG-----UCG-UGCCgGGCGUGGU- -5'
11000 3' -64 NC_002794.1 + 34389 0.66 0.638226
Target:  5'- gUGGCCaacagcuucuucuCG-CAGUACGuGCCCGaCACCGc -3'
miRNA:   3'- gGCCGG-------------GCaGUCGUGC-CGGGC-GUGGU- -5'
11000 3' -64 NC_002794.1 + 34695 0.67 0.591801
Target:  5'- cUCGucaCCCGcCAGCA-GGCCCGCcggcGCCAc -3'
miRNA:   3'- -GGCc--GGGCaGUCGUgCCGGGCG----UGGU- -5'
11000 3' -64 NC_002794.1 + 34755 0.76 0.186097
Target:  5'- aCGGCgCGgugggacgCGGCACGgccGCCCGCGCCAg -3'
miRNA:   3'- gGCCGgGCa-------GUCGUGC---CGGGCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.