miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11000 3' -64 NC_002794.1 + 195621 0.67 0.572988
Target:  5'- uCCGGCCCaaaCGGC-CGGCgacgacgagCCGCACgCAc -3'
miRNA:   3'- -GGCCGGGca-GUCGuGCCG---------GGCGUG-GU- -5'
11000 3' -64 NC_002794.1 + 194974 0.74 0.244691
Target:  5'- gCCGGCUCGUacaGGCACaGCgCCGCGCgCAc -3'
miRNA:   3'- -GGCCGGGCAg--UCGUGcCG-GGCGUG-GU- -5'
11000 3' -64 NC_002794.1 + 194908 0.67 0.572988
Target:  5'- cUCGuGCUCGccgaCAGCAgCGG-CCGCACCAg -3'
miRNA:   3'- -GGC-CGGGCa---GUCGU-GCCgGGCGUGGU- -5'
11000 3' -64 NC_002794.1 + 194838 0.72 0.317815
Target:  5'- gCGGCCCGgcgucucCAGC-CGcaccgucuGCCCGCGCCGc -3'
miRNA:   3'- gGCCGGGCa------GUCGuGC--------CGGGCGUGGU- -5'
11000 3' -64 NC_002794.1 + 194507 0.73 0.267385
Target:  5'- cCCGGCCCG-CGGCccgcgugccgcCGGCCCagcaGCGCCGc -3'
miRNA:   3'- -GGCCGGGCaGUCGu----------GCCGGG----CGUGGU- -5'
11000 3' -64 NC_002794.1 + 194262 0.68 0.516661
Target:  5'- gCUcGCCCGaCGccgccucGCACGGCgCGCGCCAc -3'
miRNA:   3'- -GGcCGGGCaGU-------CGUGCCGgGCGUGGU- -5'
11000 3' -64 NC_002794.1 + 194018 0.66 0.658134
Target:  5'- gCGGCCgccgcCGcCGGCGCcucGCCCGcCGCCGc -3'
miRNA:   3'- gGCCGG-----GCaGUCGUGc--CGGGC-GUGGU- -5'
11000 3' -64 NC_002794.1 + 193930 0.68 0.499556
Target:  5'- uUCGGCcaCCGcCGGCucCGGCCC-CGCCGc -3'
miRNA:   3'- -GGCCG--GGCaGUCGu-GCCGGGcGUGGU- -5'
11000 3' -64 NC_002794.1 + 193145 0.74 0.244145
Target:  5'- cUCGuGCCCGUacagcgccuccagCAGCACcaGCCCGCGCCGc -3'
miRNA:   3'- -GGC-CGGGCA-------------GUCGUGc-CGGGCGUGGU- -5'
11000 3' -64 NC_002794.1 + 192682 0.74 0.239274
Target:  5'- gCCGGCcgCCGUC-GUACGucuucagcaGCCCGCACCGa -3'
miRNA:   3'- -GGCCG--GGCAGuCGUGC---------CGGGCGUGGU- -5'
11000 3' -64 NC_002794.1 + 192439 0.68 0.516661
Target:  5'- gCCGGCgCGUC-GCGCGccucgcaGUCgCGCGCCAc -3'
miRNA:   3'- -GGCCGgGCAGuCGUGC-------CGG-GCGUGGU- -5'
11000 3' -64 NC_002794.1 + 191517 0.7 0.398273
Target:  5'- gCCaGCgCCG--GGCGuCGGCCCGCGCCu -3'
miRNA:   3'- -GGcCG-GGCagUCGU-GCCGGGCGUGGu -5'
11000 3' -64 NC_002794.1 + 191011 0.68 0.499556
Target:  5'- aUCGGCCguuCGaUCGGCACGuucaGCCggaCGCACCAg -3'
miRNA:   3'- -GGCCGG---GC-AGUCGUGC----CGG---GCGUGGU- -5'
11000 3' -64 NC_002794.1 + 190929 0.85 0.04622
Target:  5'- cCCGGCCCGcagccggUAGCACGGCCCcagcaGCACCAg -3'
miRNA:   3'- -GGCCGGGCa------GUCGUGCCGGG-----CGUGGU- -5'
11000 3' -64 NC_002794.1 + 190007 0.7 0.422372
Target:  5'- aUCGGCCCGUCcgGGUccaucgGCGGCCgGUAgCGc -3'
miRNA:   3'- -GGCCGGGCAG--UCG------UGCCGGgCGUgGU- -5'
11000 3' -64 NC_002794.1 + 189884 0.74 0.228223
Target:  5'- aCCGGCCCGcucgggcccgccgUCAGCGCcGCCgCGCgACCGc -3'
miRNA:   3'- -GGCCGGGC-------------AGUCGUGcCGG-GCG-UGGU- -5'
11000 3' -64 NC_002794.1 + 189562 0.75 0.208847
Target:  5'- gCGGUCCcgcucgGUCGGC-CGGCCCGgGCCGg -3'
miRNA:   3'- gGCCGGG------CAGUCGuGCCGGGCgUGGU- -5'
11000 3' -64 NC_002794.1 + 188914 0.67 0.599358
Target:  5'- gUCaGCCCGUaCAGCuucagcggacaGGCCCGCuguCCGg -3'
miRNA:   3'- -GGcCGGGCA-GUCGug---------CCGGGCGu--GGU- -5'
11000 3' -64 NC_002794.1 + 188774 0.67 0.554319
Target:  5'- aCaGCCCGgugCAGCGguagcggcCGGCCC-CGCCGa -3'
miRNA:   3'- gGcCGGGCa--GUCGU--------GCCGGGcGUGGU- -5'
11000 3' -64 NC_002794.1 + 188685 0.66 0.610715
Target:  5'- gUCGGCCaCG-CGGUACaGCUCGC-CCGu -3'
miRNA:   3'- -GGCCGG-GCaGUCGUGcCGGGCGuGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.