miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11000 5' -60.8 NC_002794.1 + 152122 0.66 0.740914
Target:  5'- cUGC-GCCGCUCCGcccugccgagccGGUUCAaccCGCUCCAg -3'
miRNA:   3'- -AUGuCGGUGGGGU------------CCGAGU---GCGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 81201 0.66 0.740914
Target:  5'- gUACGGCCGCCU---GCUCcCGCUCUu -3'
miRNA:   3'- -AUGUCGGUGGGgucCGAGuGCGAGGu -5'
11000 5' -60.8 NC_002794.1 + 151691 0.66 0.740914
Target:  5'- cUugGGUCGCCCCGccGGCcgaGCGCgCCAg -3'
miRNA:   3'- -AugUCGGUGGGGU--CCGag-UGCGaGGU- -5'
11000 5' -60.8 NC_002794.1 + 114725 0.66 0.740914
Target:  5'- gGCGGCgGCUCCGGGUUCgucgagccgGCGCcgCCc -3'
miRNA:   3'- aUGUCGgUGGGGUCCGAG---------UGCGa-GGu -5'
11000 5' -60.8 NC_002794.1 + 69941 0.66 0.739969
Target:  5'- uUACAGcCCACgucggugCCCGGGUugugcgUCACGC-CCAg -3'
miRNA:   3'- -AUGUC-GGUG-------GGGUCCG------AGUGCGaGGU- -5'
11000 5' -60.8 NC_002794.1 + 79046 0.66 0.731427
Target:  5'- -cCGGCCGCuCCCGcGCUCGCuCUUCAc -3'
miRNA:   3'- auGUCGGUG-GGGUcCGAGUGcGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 137083 0.66 0.731427
Target:  5'- cGCGcGCCAUgUCGcccGCUCGCGCUCCu -3'
miRNA:   3'- aUGU-CGGUGgGGUc--CGAGUGCGAGGu -5'
11000 5' -60.8 NC_002794.1 + 152184 0.66 0.731427
Target:  5'- gUGCAGCUACCUgaaCAcGG-UCGCGUUCCGc -3'
miRNA:   3'- -AUGUCGGUGGG---GU-CCgAGUGCGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 45836 0.66 0.730473
Target:  5'- aGCAGCU-CCCCGucguacgcggcgcGGCUCACGUuuUUCAg -3'
miRNA:   3'- aUGUCGGuGGGGU-------------CCGAGUGCG--AGGU- -5'
11000 5' -60.8 NC_002794.1 + 59441 0.66 0.721859
Target:  5'- cGCAGaUCGCCgCCGGGCUCuccgACGacaUCCGc -3'
miRNA:   3'- aUGUC-GGUGG-GGUCCGAG----UGCg--AGGU- -5'
11000 5' -60.8 NC_002794.1 + 127213 0.66 0.721859
Target:  5'- aGCAGCCucaACCCCA-GCagGCGCcCCGc -3'
miRNA:   3'- aUGUCGG---UGGGGUcCGagUGCGaGGU- -5'
11000 5' -60.8 NC_002794.1 + 99278 0.66 0.721859
Target:  5'- -cCGGCgCGCuCCCGGGCUCuucCGCgaccgCCGc -3'
miRNA:   3'- auGUCG-GUG-GGGUCCGAGu--GCGa----GGU- -5'
11000 5' -60.8 NC_002794.1 + 35 0.66 0.716082
Target:  5'- --aGGCCGCCgCGGGCUCucggacgaacggccgACGCccgCCAc -3'
miRNA:   3'- augUCGGUGGgGUCCGAG---------------UGCGa--GGU- -5'
11000 5' -60.8 NC_002794.1 + 189576 0.66 0.712218
Target:  5'- -uCGGCCGgCCCGGGCcgGCGCcCCu -3'
miRNA:   3'- auGUCGGUgGGGUCCGagUGCGaGGu -5'
11000 5' -60.8 NC_002794.1 + 114038 0.66 0.712218
Target:  5'- aGCGGCCGCCCgUAGucGC-CGCGCaCCAg -3'
miRNA:   3'- aUGUCGGUGGG-GUC--CGaGUGCGaGGU- -5'
11000 5' -60.8 NC_002794.1 + 66804 0.66 0.712218
Target:  5'- cGCAGUCGCCCggcaucgucaGGGCgcccggCGCGaCUCCGg -3'
miRNA:   3'- aUGUCGGUGGGg---------UCCGa-----GUGC-GAGGU- -5'
11000 5' -60.8 NC_002794.1 + 36703 0.66 0.712218
Target:  5'- gUGCAGaC-CUCCAGGCUCACGUggCGc -3'
miRNA:   3'- -AUGUCgGuGGGGUCCGAGUGCGagGU- -5'
11000 5' -60.8 NC_002794.1 + 194448 0.66 0.71125
Target:  5'- -cCGGCCGCUccuuaaaCCAGuaGC-CGCGCUCCAg -3'
miRNA:   3'- auGUCGGUGG-------GGUC--CGaGUGCGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 151594 0.66 0.702513
Target:  5'- cGCcGCCGCCgCGGGCcCGCgGUUCCu -3'
miRNA:   3'- aUGuCGGUGGgGUCCGaGUG-CGAGGu -5'
11000 5' -60.8 NC_002794.1 + 185310 0.66 0.702513
Target:  5'- -cCGGUCGCCCCAGugUCGC-CUCCAc -3'
miRNA:   3'- auGUCGGUGGGGUCcgAGUGcGAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.