Results 21 - 40 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11000 | 5' | -60.8 | NC_002794.1 | + | 99278 | 0.66 | 0.721859 |
Target: 5'- -cCGGCgCGCuCCCGGGCUCuucCGCgaccgCCGc -3' miRNA: 3'- auGUCG-GUG-GGGUCCGAGu--GCGa----GGU- -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 45836 | 0.66 | 0.730473 |
Target: 5'- aGCAGCU-CCCCGucguacgcggcgcGGCUCACGUuuUUCAg -3' miRNA: 3'- aUGUCGGuGGGGU-------------CCGAGUGCG--AGGU- -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 152184 | 0.66 | 0.731427 |
Target: 5'- gUGCAGCUACCUgaaCAcGG-UCGCGUUCCGc -3' miRNA: 3'- -AUGUCGGUGGG---GU-CCgAGUGCGAGGU- -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 30345 | 0.67 | 0.663218 |
Target: 5'- gAUGGCCACCUucccgagcgaCAGGCcCugGCUCUu -3' miRNA: 3'- aUGUCGGUGGG----------GUCCGaGugCGAGGu -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 145200 | 0.67 | 0.643397 |
Target: 5'- cGCGGCgGCCCUccGGCa-GCGCUCCu -3' miRNA: 3'- aUGUCGgUGGGGu-CCGagUGCGAGGu -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 12022 | 0.67 | 0.653316 |
Target: 5'- cGCcGCCGgCCCGGGCgucCGCGCcuUCCc -3' miRNA: 3'- aUGuCGGUgGGGUCCGa--GUGCG--AGGu -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 19971 | 0.67 | 0.663218 |
Target: 5'- cUGCGGCCGCCCUucGGGCuguccguccuggUgGCGCUgCGc -3' miRNA: 3'- -AUGUCGGUGGGG--UCCG------------AgUGCGAgGU- -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 113682 | 0.67 | 0.63347 |
Target: 5'- aGCAggcccGCCACCgucggcagcgCCAGGUUCugGCUCa- -3' miRNA: 3'- aUGU-----CGGUGG----------GGUCCGAGugCGAGgu -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 13764 | 0.67 | 0.632477 |
Target: 5'- gACucGCCGCCCCGGaGC-CACccgggugGCUCCGg -3' miRNA: 3'- aUGu-CGGUGGGGUC-CGaGUG-------CGAGGU- -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 62934 | 0.67 | 0.663218 |
Target: 5'- cUACGGCCGCUgCguGGGCuucuUCGCGC-CCAa -3' miRNA: 3'- -AUGUCGGUGGgG--UCCG----AGUGCGaGGU- -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 81139 | 0.67 | 0.663218 |
Target: 5'- cACGGCCGCUCCAuccGGCUC-CcCUUCAu -3' miRNA: 3'- aUGUCGGUGGGGU---CCGAGuGcGAGGU- -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 184966 | 0.67 | 0.663218 |
Target: 5'- cGCAGCCGCUcgUCGGGCagCACGCagCGc -3' miRNA: 3'- aUGUCGGUGG--GGUCCGa-GUGCGagGU- -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 145421 | 0.67 | 0.682945 |
Target: 5'- cGCGGCgCGCCgCCGucGGCUCACgaGCUCgCGa -3' miRNA: 3'- aUGUCG-GUGG-GGU--CCGAGUG--CGAG-GU- -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 71149 | 0.67 | 0.673097 |
Target: 5'- gGCuguGCCGCCCC-GGCaaGCGCaCCAg -3' miRNA: 3'- aUGu--CGGUGGGGuCCGagUGCGaGGU- -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 55326 | 0.67 | 0.673097 |
Target: 5'- gGCGGCUuccgaggaCCCGGGgUCGCGC-CCGa -3' miRNA: 3'- aUGUCGGug------GGGUCCgAGUGCGaGGU- -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 91236 | 0.67 | 0.663218 |
Target: 5'- cGCGGCgGCCgUCGGGCU-GCGCUCgCGg -3' miRNA: 3'- aUGUCGgUGG-GGUCCGAgUGCGAG-GU- -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 48088 | 0.67 | 0.673097 |
Target: 5'- aGCAGCCGCCgcucgccggcgUCAGGCUCGag-UCCAu -3' miRNA: 3'- aUGUCGGUGG-----------GGUCCGAGUgcgAGGU- -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 130653 | 0.67 | 0.663218 |
Target: 5'- ---cGCCGCCCCGccgccGGCcgCGgGCUCCGc -3' miRNA: 3'- auguCGGUGGGGU-----CCGa-GUgCGAGGU- -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 48370 | 0.68 | 0.603712 |
Target: 5'- -cCAGCCGCCacaCGcaCUCACGUUCCAa -3' miRNA: 3'- auGUCGGUGGg--GUccGAGUGCGAGGU- -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 78987 | 0.68 | 0.623542 |
Target: 5'- cUGCGGCCGCUCCcGGagUCGCGgcgaCUCCAu -3' miRNA: 3'- -AUGUCGGUGGGGuCCg-AGUGC----GAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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