Results 1 - 20 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11000 | 5' | -60.8 | NC_002794.1 | + | 71373 | 0.75 | 0.263689 |
Target: 5'- gGCAGCCGCCCCAGGaccuccucCACGgUCUg -3' miRNA: 3'- aUGUCGGUGGGGUCCga------GUGCgAGGu -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 185933 | 0.74 | 0.28894 |
Target: 5'- -cCGGCCACCcgCCAGGCUCGCGg-CCGc -3' miRNA: 3'- auGUCGGUGG--GGUCCGAGUGCgaGGU- -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 113962 | 0.74 | 0.28894 |
Target: 5'- cUGCAGCCACUCCu-GCUCGCGCcgcUCCu -3' miRNA: 3'- -AUGUCGGUGGGGucCGAGUGCG---AGGu -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 193362 | 0.74 | 0.309097 |
Target: 5'- aGCAGCCgguGCCaCGGGC-CGCGCUCCu -3' miRNA: 3'- aUGUCGG---UGGgGUCCGaGUGCGAGGu -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 185003 | 0.74 | 0.274824 |
Target: 5'- gGCGGCCGCCCaCGGGaCUCAgcacggugaccaGCUCCAa -3' miRNA: 3'- aUGUCGGUGGG-GUCC-GAGUg-----------CGAGGU- -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 53947 | 0.73 | 0.337614 |
Target: 5'- cGCAGCCGCCaCAGaGcCUCGCGCgUCCGc -3' miRNA: 3'- aUGUCGGUGGgGUC-C-GAGUGCG-AGGU- -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 36873 | 0.72 | 0.383879 |
Target: 5'- cUGCAGCCGCgCCAGGUagCGCGUgcagagcgUCCAg -3' miRNA: 3'- -AUGUCGGUGgGGUCCGa-GUGCG--------AGGU- -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 181833 | 0.72 | 0.375882 |
Target: 5'- cGCGGCCAggUCCCGGGCgagcUCGCaCUCCAu -3' miRNA: 3'- aUGUCGGU--GGGGUCCG----AGUGcGAGGU- -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 41246 | 0.71 | 0.416973 |
Target: 5'- cGCGGCCGCCgacgCCGgcGGCccgucgUCGCGCUCCGa -3' miRNA: 3'- aUGUCGGUGG----GGU--CCG------AGUGCGAGGU- -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 84207 | 0.71 | 0.451751 |
Target: 5'- -cCA-CCACCCCGGGC--GCGCUCCc -3' miRNA: 3'- auGUcGGUGGGGUCCGagUGCGAGGu -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 195506 | 0.71 | 0.442907 |
Target: 5'- --aAGCCGCCCC-GGCaCACGC-CCAc -3' miRNA: 3'- augUCGGUGGGGuCCGaGUGCGaGGU- -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 148430 | 0.71 | 0.425515 |
Target: 5'- aGCAcGCCgGCUCCuGGCUgGCGCUCUAc -3' miRNA: 3'- aUGU-CGG-UGGGGuCCGAgUGCGAGGU- -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 192636 | 0.71 | 0.434161 |
Target: 5'- gGCGGCCGCUCCAGccGCgccgccgCGCGCUCg- -3' miRNA: 3'- aUGUCGGUGGGGUC--CGa------GUGCGAGgu -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 8351 | 0.71 | 0.425515 |
Target: 5'- gUGCAGCCcCCCCuucgaagccGGGCgcauccgCAUGCUCCu -3' miRNA: 3'- -AUGUCGGuGGGG---------UCCGa------GUGCGAGGu -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 10671 | 0.71 | 0.451751 |
Target: 5'- cUGgAGCCGCCUgagcuucgUGGGuCUCACGCUCCu -3' miRNA: 3'- -AUgUCGGUGGG--------GUCC-GAGUGCGAGGu -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 65017 | 0.71 | 0.425515 |
Target: 5'- -uCAGCCugucgcuagACUCCGuGCUCGCGCUCCGc -3' miRNA: 3'- auGUCGG---------UGGGGUcCGAGUGCGAGGU- -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 85016 | 0.71 | 0.425515 |
Target: 5'- -uCGGgUGCCCCGGGCcCACGCUCgGg -3' miRNA: 3'- auGUCgGUGGGGUCCGaGUGCGAGgU- -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 115089 | 0.7 | 0.497348 |
Target: 5'- gGCGGCCGCCCgCA-GC-CGCGCgUCCGc -3' miRNA: 3'- aUGUCGGUGGG-GUcCGaGUGCG-AGGU- -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 119772 | 0.7 | 0.506719 |
Target: 5'- cGCGGCCgGCCuCCAGGCg---GCUCCGg -3' miRNA: 3'- aUGUCGG-UGG-GGUCCGagugCGAGGU- -5' |
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11000 | 5' | -60.8 | NC_002794.1 | + | 58421 | 0.7 | 0.506719 |
Target: 5'- gUGCGGCCGCCgCCagacgccgAGGC-CACGCUgCGc -3' miRNA: 3'- -AUGUCGGUGG-GG--------UCCGaGUGCGAgGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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