miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11000 5' -60.8 NC_002794.1 + 71373 0.75 0.263689
Target:  5'- gGCAGCCGCCCCAGGaccuccucCACGgUCUg -3'
miRNA:   3'- aUGUCGGUGGGGUCCga------GUGCgAGGu -5'
11000 5' -60.8 NC_002794.1 + 185003 0.74 0.274824
Target:  5'- gGCGGCCGCCCaCGGGaCUCAgcacggugaccaGCUCCAa -3'
miRNA:   3'- aUGUCGGUGGG-GUCC-GAGUg-----------CGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 185933 0.74 0.28894
Target:  5'- -cCGGCCACCcgCCAGGCUCGCGg-CCGc -3'
miRNA:   3'- auGUCGGUGG--GGUCCGAGUGCgaGGU- -5'
11000 5' -60.8 NC_002794.1 + 113962 0.74 0.28894
Target:  5'- cUGCAGCCACUCCu-GCUCGCGCcgcUCCu -3'
miRNA:   3'- -AUGUCGGUGGGGucCGAGUGCG---AGGu -5'
11000 5' -60.8 NC_002794.1 + 193362 0.74 0.309097
Target:  5'- aGCAGCCgguGCCaCGGGC-CGCGCUCCu -3'
miRNA:   3'- aUGUCGG---UGGgGUCCGaGUGCGAGGu -5'
11000 5' -60.8 NC_002794.1 + 53947 0.73 0.337614
Target:  5'- cGCAGCCGCCaCAGaGcCUCGCGCgUCCGc -3'
miRNA:   3'- aUGUCGGUGGgGUC-C-GAGUGCG-AGGU- -5'
11000 5' -60.8 NC_002794.1 + 181833 0.72 0.375882
Target:  5'- cGCGGCCAggUCCCGGGCgagcUCGCaCUCCAu -3'
miRNA:   3'- aUGUCGGU--GGGGUCCG----AGUGcGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 36873 0.72 0.383879
Target:  5'- cUGCAGCCGCgCCAGGUagCGCGUgcagagcgUCCAg -3'
miRNA:   3'- -AUGUCGGUGgGGUCCGa-GUGCG--------AGGU- -5'
11000 5' -60.8 NC_002794.1 + 41246 0.71 0.416973
Target:  5'- cGCGGCCGCCgacgCCGgcGGCccgucgUCGCGCUCCGa -3'
miRNA:   3'- aUGUCGGUGG----GGU--CCG------AGUGCGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 85016 0.71 0.425515
Target:  5'- -uCGGgUGCCCCGGGCcCACGCUCgGg -3'
miRNA:   3'- auGUCgGUGGGGUCCGaGUGCGAGgU- -5'
11000 5' -60.8 NC_002794.1 + 148430 0.71 0.425515
Target:  5'- aGCAcGCCgGCUCCuGGCUgGCGCUCUAc -3'
miRNA:   3'- aUGU-CGG-UGGGGuCCGAgUGCGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 65017 0.71 0.425515
Target:  5'- -uCAGCCugucgcuagACUCCGuGCUCGCGCUCCGc -3'
miRNA:   3'- auGUCGG---------UGGGGUcCGAGUGCGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 8351 0.71 0.425515
Target:  5'- gUGCAGCCcCCCCuucgaagccGGGCgcauccgCAUGCUCCu -3'
miRNA:   3'- -AUGUCGGuGGGG---------UCCGa------GUGCGAGGu -5'
11000 5' -60.8 NC_002794.1 + 192636 0.71 0.434161
Target:  5'- gGCGGCCGCUCCAGccGCgccgccgCGCGCUCg- -3'
miRNA:   3'- aUGUCGGUGGGGUC--CGa------GUGCGAGgu -5'
11000 5' -60.8 NC_002794.1 + 195506 0.71 0.442907
Target:  5'- --aAGCCGCCCC-GGCaCACGC-CCAc -3'
miRNA:   3'- augUCGGUGGGGuCCGaGUGCGaGGU- -5'
11000 5' -60.8 NC_002794.1 + 10671 0.71 0.451751
Target:  5'- cUGgAGCCGCCUgagcuucgUGGGuCUCACGCUCCu -3'
miRNA:   3'- -AUgUCGGUGGG--------GUCC-GAGUGCGAGGu -5'
11000 5' -60.8 NC_002794.1 + 84207 0.71 0.451751
Target:  5'- -cCA-CCACCCCGGGC--GCGCUCCc -3'
miRNA:   3'- auGUcGGUGGGGUCCGagUGCGAGGu -5'
11000 5' -60.8 NC_002794.1 + 51368 0.7 0.459794
Target:  5'- gGCGGCCGCCCCGuccggccGGCgacaggCGCcCUCCGg -3'
miRNA:   3'- aUGUCGGUGGGGU-------CCGa-----GUGcGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 83881 0.7 0.488057
Target:  5'- cGCGaCgGCCCCGGGCUCgGCGC-CCGa -3'
miRNA:   3'- aUGUcGgUGGGGUCCGAG-UGCGaGGU- -5'
11000 5' -60.8 NC_002794.1 + 115089 0.7 0.497348
Target:  5'- gGCGGCCGCCCgCA-GC-CGCGCgUCCGc -3'
miRNA:   3'- aUGUCGGUGGG-GUcCGaGUGCG-AGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.