miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11000 5' -60.8 NC_002794.1 + 128016 0.66 0.70154
Target:  5'- -uCGGCCGCCCCGucGGCUgacacccCGCGggCCAc -3'
miRNA:   3'- auGUCGGUGGGGU--CCGA-------GUGCgaGGU- -5'
11000 5' -60.8 NC_002794.1 + 61823 0.66 0.692753
Target:  5'- gGCGGCCGCCggcggCC-GGCgUCAcucCGCUCCGc -3'
miRNA:   3'- aUGUCGGUGG-----GGuCCG-AGU---GCGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 193992 0.66 0.692753
Target:  5'- cUACcGCCGCCCCcGGCuUCGC-CUUCGc -3'
miRNA:   3'- -AUGuCGGUGGGGuCCG-AGUGcGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 145421 0.67 0.682945
Target:  5'- cGCGGCgCGCCgCCGucGGCUCACgaGCUCgCGa -3'
miRNA:   3'- aUGUCG-GUGG-GGU--CCGAGUG--CGAG-GU- -5'
11000 5' -60.8 NC_002794.1 + 71149 0.67 0.673097
Target:  5'- gGCuguGCCGCCCC-GGCaaGCGCaCCAg -3'
miRNA:   3'- aUGu--CGGUGGGGuCCGagUGCGaGGU- -5'
11000 5' -60.8 NC_002794.1 + 55326 0.67 0.673097
Target:  5'- gGCGGCUuccgaggaCCCGGGgUCGCGC-CCGa -3'
miRNA:   3'- aUGUCGGug------GGGUCCgAGUGCGaGGU- -5'
11000 5' -60.8 NC_002794.1 + 48088 0.67 0.673097
Target:  5'- aGCAGCCGCCgcucgccggcgUCAGGCUCGag-UCCAu -3'
miRNA:   3'- aUGUCGGUGG-----------GGUCCGAGUgcgAGGU- -5'
11000 5' -60.8 NC_002794.1 + 19971 0.67 0.663218
Target:  5'- cUGCGGCCGCCCUucGGGCuguccguccuggUgGCGCUgCGc -3'
miRNA:   3'- -AUGUCGGUGGGG--UCCG------------AgUGCGAgGU- -5'
11000 5' -60.8 NC_002794.1 + 30345 0.67 0.663218
Target:  5'- gAUGGCCACCUucccgagcgaCAGGCcCugGCUCUu -3'
miRNA:   3'- aUGUCGGUGGG----------GUCCGaGugCGAGGu -5'
11000 5' -60.8 NC_002794.1 + 62934 0.67 0.663218
Target:  5'- cUACGGCCGCUgCguGGGCuucuUCGCGC-CCAa -3'
miRNA:   3'- -AUGUCGGUGGgG--UCCG----AGUGCGaGGU- -5'
11000 5' -60.8 NC_002794.1 + 81139 0.67 0.663218
Target:  5'- cACGGCCGCUCCAuccGGCUC-CcCUUCAu -3'
miRNA:   3'- aUGUCGGUGGGGU---CCGAGuGcGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 184966 0.67 0.663218
Target:  5'- cGCAGCCGCUcgUCGGGCagCACGCagCGc -3'
miRNA:   3'- aUGUCGGUGG--GGUCCGa-GUGCGagGU- -5'
11000 5' -60.8 NC_002794.1 + 130653 0.67 0.663218
Target:  5'- ---cGCCGCCCCGccgccGGCcgCGgGCUCCGc -3'
miRNA:   3'- auguCGGUGGGGU-----CCGa-GUgCGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 91236 0.67 0.663218
Target:  5'- cGCGGCgGCCgUCGGGCU-GCGCUCgCGg -3'
miRNA:   3'- aUGUCGgUGG-GGUCCGAgUGCGAG-GU- -5'
11000 5' -60.8 NC_002794.1 + 12022 0.67 0.653316
Target:  5'- cGCcGCCGgCCCGGGCgucCGCGCcuUCCc -3'
miRNA:   3'- aUGuCGGUgGGGUCCGa--GUGCG--AGGu -5'
11000 5' -60.8 NC_002794.1 + 145200 0.67 0.643397
Target:  5'- cGCGGCgGCCCUccGGCa-GCGCUCCu -3'
miRNA:   3'- aUGUCGgUGGGGu-CCGagUGCGAGGu -5'
11000 5' -60.8 NC_002794.1 + 113682 0.67 0.63347
Target:  5'- aGCAggcccGCCACCgucggcagcgCCAGGUUCugGCUCa- -3'
miRNA:   3'- aUGU-----CGGUGG----------GGUCCGAGugCGAGgu -5'
11000 5' -60.8 NC_002794.1 + 13764 0.67 0.632477
Target:  5'- gACucGCCGCCCCGGaGC-CACccgggugGCUCCGg -3'
miRNA:   3'- aUGu-CGGUGGGGUC-CGaGUG-------CGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 30235 0.68 0.623542
Target:  5'- gGCAGCCGCaUCGGGUUCAgGUUCa- -3'
miRNA:   3'- aUGUCGGUGgGGUCCGAGUgCGAGgu -5'
11000 5' -60.8 NC_002794.1 + 78987 0.68 0.623542
Target:  5'- cUGCGGCCGCUCCcGGagUCGCGgcgaCUCCAu -3'
miRNA:   3'- -AUGUCGGUGGGGuCCg-AGUGC----GAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.