miRNA display CGI


Results 41 - 60 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11000 5' -60.8 NC_002794.1 + 67441 0.68 0.603712
Target:  5'- cGC-GCCGCUUCGGGCUCcCGC-CCGc -3'
miRNA:   3'- aUGuCGGUGGGGUCCGAGuGCGaGGU- -5'
11000 5' -60.8 NC_002794.1 + 48370 0.68 0.603712
Target:  5'- -cCAGCCGCCacaCGcaCUCACGUUCCAa -3'
miRNA:   3'- auGUCGGUGGg--GUccGAGUGCGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 92866 0.68 0.602723
Target:  5'- cUAC-GCCGCCUCGGGCcggCACGUccugcucUCCAc -3'
miRNA:   3'- -AUGuCGGUGGGGUCCGa--GUGCG-------AGGU- -5'
11000 5' -60.8 NC_002794.1 + 186873 0.68 0.593824
Target:  5'- aGCAGCgGgCUC-GGCUCGCGgUCCGg -3'
miRNA:   3'- aUGUCGgUgGGGuCCGAGUGCgAGGU- -5'
11000 5' -60.8 NC_002794.1 + 66680 0.68 0.593824
Target:  5'- aACGGCCccggcGCCCCAGGCaaaGCGUacgCCGc -3'
miRNA:   3'- aUGUCGG-----UGGGGUCCGag-UGCGa--GGU- -5'
11000 5' -60.8 NC_002794.1 + 118680 0.68 0.574132
Target:  5'- cGCGGCCGCCgCC-GGCggcaGCGC-CCAg -3'
miRNA:   3'- aUGUCGGUGG-GGuCCGag--UGCGaGGU- -5'
11000 5' -60.8 NC_002794.1 + 34252 0.69 0.554595
Target:  5'- gGCuGCCGCCgCAGGCggacCGCGCgcaggcggCCAg -3'
miRNA:   3'- aUGuCGGUGGgGUCCGa---GUGCGa-------GGU- -5'
11000 5' -60.8 NC_002794.1 + 68826 0.69 0.554595
Target:  5'- gACGGCgaCGCCgCCGGcGCUCGCGgUCCc -3'
miRNA:   3'- aUGUCG--GUGG-GGUC-CGAGUGCgAGGu -5'
11000 5' -60.8 NC_002794.1 + 184457 0.69 0.544899
Target:  5'- cGCuGCCGCCCgCGGGC-CGCGCgaaCGg -3'
miRNA:   3'- aUGuCGGUGGG-GUCCGaGUGCGag-GU- -5'
11000 5' -60.8 NC_002794.1 + 43806 0.69 0.544899
Target:  5'- ---cGCCGCUCCGGGCcCAgGCUCUc -3'
miRNA:   3'- auguCGGUGGGGUCCGaGUgCGAGGu -5'
11000 5' -60.8 NC_002794.1 + 47345 0.69 0.544899
Target:  5'- gGCGGCgGCCuCCGGacGUUCGCGCUCa- -3'
miRNA:   3'- aUGUCGgUGG-GGUC--CGAGUGCGAGgu -5'
11000 5' -60.8 NC_002794.1 + 71538 0.69 0.535258
Target:  5'- aACAGCU-CCUuggaCAGGCUCAgcUGCUCCAc -3'
miRNA:   3'- aUGUCGGuGGG----GUCCGAGU--GCGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 85523 0.69 0.525678
Target:  5'- -uCGGCCucGCCCCGcGGCUC-CGC-CCAa -3'
miRNA:   3'- auGUCGG--UGGGGU-CCGAGuGCGaGGU- -5'
11000 5' -60.8 NC_002794.1 + 185987 0.69 0.525678
Target:  5'- ---cGCCACCgucuccuccgCCGGGCUCcgcCGCUCCGg -3'
miRNA:   3'- auguCGGUGG----------GGUCCGAGu--GCGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 67740 0.69 0.525678
Target:  5'- gGCGGCCACCCgAgcccggaucacGGCUCGCgGCaacgCCAg -3'
miRNA:   3'- aUGUCGGUGGGgU-----------CCGAGUG-CGa---GGU- -5'
11000 5' -60.8 NC_002794.1 + 100552 0.69 0.522816
Target:  5'- gGCGGCCuuCCCCGuGGCcgagcggcaccucuUCACGCUCgGg -3'
miRNA:   3'- aUGUCGGu-GGGGU-CCG--------------AGUGCGAGgU- -5'
11000 5' -60.8 NC_002794.1 + 58421 0.7 0.506719
Target:  5'- gUGCGGCCGCCgCCagacgccgAGGC-CACGCUgCGc -3'
miRNA:   3'- -AUGUCGGUGG-GG--------UCCGaGUGCGAgGU- -5'
11000 5' -60.8 NC_002794.1 + 119772 0.7 0.506719
Target:  5'- cGCGGCCgGCCuCCAGGCg---GCUCCGg -3'
miRNA:   3'- aUGUCGG-UGG-GGUCCGagugCGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 115089 0.7 0.497348
Target:  5'- gGCGGCCGCCCgCA-GC-CGCGCgUCCGc -3'
miRNA:   3'- aUGUCGGUGGG-GUcCGaGUGCG-AGGU- -5'
11000 5' -60.8 NC_002794.1 + 83881 0.7 0.488057
Target:  5'- cGCGaCgGCCCCGGGCUCgGCGC-CCGa -3'
miRNA:   3'- aUGUcGgUGGGGUCCGAG-UGCGaGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.