miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11000 5' -60.8 NC_002794.1 + 35 0.66 0.716082
Target:  5'- --aGGCCGCCgCGGGCUCucggacgaacggccgACGCccgCCAc -3'
miRNA:   3'- augUCGGUGGgGUCCGAG---------------UGCGa--GGU- -5'
11000 5' -60.8 NC_002794.1 + 8351 0.71 0.425515
Target:  5'- gUGCAGCCcCCCCuucgaagccGGGCgcauccgCAUGCUCCu -3'
miRNA:   3'- -AUGUCGGuGGGG---------UCCGa------GUGCGAGGu -5'
11000 5' -60.8 NC_002794.1 + 10671 0.71 0.451751
Target:  5'- cUGgAGCCGCCUgagcuucgUGGGuCUCACGCUCCu -3'
miRNA:   3'- -AUgUCGGUGGG--------GUCC-GAGUGCGAGGu -5'
11000 5' -60.8 NC_002794.1 + 12022 0.67 0.653316
Target:  5'- cGCcGCCGgCCCGGGCgucCGCGCcuUCCc -3'
miRNA:   3'- aUGuCGGUgGGGUCCGa--GUGCG--AGGu -5'
11000 5' -60.8 NC_002794.1 + 13764 0.67 0.632477
Target:  5'- gACucGCCGCCCCGGaGC-CACccgggugGCUCCGg -3'
miRNA:   3'- aUGu-CGGUGGGGUC-CGaGUG-------CGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 19971 0.67 0.663218
Target:  5'- cUGCGGCCGCCCUucGGGCuguccguccuggUgGCGCUgCGc -3'
miRNA:   3'- -AUGUCGGUGGGG--UCCG------------AgUGCGAgGU- -5'
11000 5' -60.8 NC_002794.1 + 30235 0.68 0.623542
Target:  5'- gGCAGCCGCaUCGGGUUCAgGUUCa- -3'
miRNA:   3'- aUGUCGGUGgGGUCCGAGUgCGAGgu -5'
11000 5' -60.8 NC_002794.1 + 30345 0.67 0.663218
Target:  5'- gAUGGCCACCUucccgagcgaCAGGCcCugGCUCUu -3'
miRNA:   3'- aUGUCGGUGGG----------GUCCGaGugCGAGGu -5'
11000 5' -60.8 NC_002794.1 + 34252 0.69 0.554595
Target:  5'- gGCuGCCGCCgCAGGCggacCGCGCgcaggcggCCAg -3'
miRNA:   3'- aUGuCGGUGGgGUCCGa---GUGCGa-------GGU- -5'
11000 5' -60.8 NC_002794.1 + 36703 0.66 0.712218
Target:  5'- gUGCAGaC-CUCCAGGCUCACGUggCGc -3'
miRNA:   3'- -AUGUCgGuGGGGUCCGAGUGCGagGU- -5'
11000 5' -60.8 NC_002794.1 + 36873 0.72 0.383879
Target:  5'- cUGCAGCCGCgCCAGGUagCGCGUgcagagcgUCCAg -3'
miRNA:   3'- -AUGUCGGUGgGGUCCGa-GUGCG--------AGGU- -5'
11000 5' -60.8 NC_002794.1 + 41246 0.71 0.416973
Target:  5'- cGCGGCCGCCgacgCCGgcGGCccgucgUCGCGCUCCGa -3'
miRNA:   3'- aUGUCGGUGG----GGU--CCG------AGUGCGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 43806 0.69 0.544899
Target:  5'- ---cGCCGCUCCGGGCcCAgGCUCUc -3'
miRNA:   3'- auguCGGUGGGGUCCGaGUgCGAGGu -5'
11000 5' -60.8 NC_002794.1 + 45836 0.66 0.730473
Target:  5'- aGCAGCU-CCCCGucguacgcggcgcGGCUCACGUuuUUCAg -3'
miRNA:   3'- aUGUCGGuGGGGU-------------CCGAGUGCG--AGGU- -5'
11000 5' -60.8 NC_002794.1 + 47345 0.69 0.544899
Target:  5'- gGCGGCgGCCuCCGGacGUUCGCGCUCa- -3'
miRNA:   3'- aUGUCGgUGG-GGUC--CGAGUGCGAGgu -5'
11000 5' -60.8 NC_002794.1 + 48088 0.67 0.673097
Target:  5'- aGCAGCCGCCgcucgccggcgUCAGGCUCGag-UCCAu -3'
miRNA:   3'- aUGUCGGUGG-----------GGUCCGAGUgcgAGGU- -5'
11000 5' -60.8 NC_002794.1 + 48370 0.68 0.603712
Target:  5'- -cCAGCCGCCacaCGcaCUCACGUUCCAa -3'
miRNA:   3'- auGUCGGUGGg--GUccGAGUGCGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 51368 0.7 0.459794
Target:  5'- gGCGGCCGCCCCGuccggccGGCgacaggCGCcCUCCGg -3'
miRNA:   3'- aUGUCGGUGGGGU-------CCGa-----GUGcGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 53947 0.73 0.337614
Target:  5'- cGCAGCCGCCaCAGaGcCUCGCGCgUCCGc -3'
miRNA:   3'- aUGUCGGUGGgGUC-C-GAGUGCG-AGGU- -5'
11000 5' -60.8 NC_002794.1 + 55326 0.67 0.673097
Target:  5'- gGCGGCUuccgaggaCCCGGGgUCGCGC-CCGa -3'
miRNA:   3'- aUGUCGGug------GGGUCCgAGUGCGaGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.