miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11000 5' -60.8 NC_002794.1 + 58421 0.7 0.506719
Target:  5'- gUGCGGCCGCCgCCagacgccgAGGC-CACGCUgCGc -3'
miRNA:   3'- -AUGUCGGUGG-GG--------UCCGaGUGCGAgGU- -5'
11000 5' -60.8 NC_002794.1 + 59441 0.66 0.721859
Target:  5'- cGCAGaUCGCCgCCGGGCUCuccgACGacaUCCGc -3'
miRNA:   3'- aUGUC-GGUGG-GGUCCGAG----UGCg--AGGU- -5'
11000 5' -60.8 NC_002794.1 + 61823 0.66 0.692753
Target:  5'- gGCGGCCGCCggcggCC-GGCgUCAcucCGCUCCGc -3'
miRNA:   3'- aUGUCGGUGG-----GGuCCG-AGU---GCGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 62934 0.67 0.663218
Target:  5'- cUACGGCCGCUgCguGGGCuucuUCGCGC-CCAa -3'
miRNA:   3'- -AUGUCGGUGGgG--UCCG----AGUGCGaGGU- -5'
11000 5' -60.8 NC_002794.1 + 65017 0.71 0.425515
Target:  5'- -uCAGCCugucgcuagACUCCGuGCUCGCGCUCCGc -3'
miRNA:   3'- auGUCGG---------UGGGGUcCGAGUGCGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 66680 0.68 0.593824
Target:  5'- aACGGCCccggcGCCCCAGGCaaaGCGUacgCCGc -3'
miRNA:   3'- aUGUCGG-----UGGGGUCCGag-UGCGa--GGU- -5'
11000 5' -60.8 NC_002794.1 + 66804 0.66 0.712218
Target:  5'- cGCAGUCGCCCggcaucgucaGGGCgcccggCGCGaCUCCGg -3'
miRNA:   3'- aUGUCGGUGGGg---------UCCGa-----GUGC-GAGGU- -5'
11000 5' -60.8 NC_002794.1 + 67441 0.68 0.603712
Target:  5'- cGC-GCCGCUUCGGGCUCcCGC-CCGc -3'
miRNA:   3'- aUGuCGGUGGGGUCCGAGuGCGaGGU- -5'
11000 5' -60.8 NC_002794.1 + 67740 0.69 0.525678
Target:  5'- gGCGGCCACCCgAgcccggaucacGGCUCGCgGCaacgCCAg -3'
miRNA:   3'- aUGUCGGUGGGgU-----------CCGAGUG-CGa---GGU- -5'
11000 5' -60.8 NC_002794.1 + 68826 0.69 0.554595
Target:  5'- gACGGCgaCGCCgCCGGcGCUCGCGgUCCc -3'
miRNA:   3'- aUGUCG--GUGG-GGUC-CGAGUGCgAGGu -5'
11000 5' -60.8 NC_002794.1 + 69941 0.66 0.739969
Target:  5'- uUACAGcCCACgucggugCCCGGGUugugcgUCACGC-CCAg -3'
miRNA:   3'- -AUGUC-GGUG-------GGGUCCG------AGUGCGaGGU- -5'
11000 5' -60.8 NC_002794.1 + 71149 0.67 0.673097
Target:  5'- gGCuguGCCGCCCC-GGCaaGCGCaCCAg -3'
miRNA:   3'- aUGu--CGGUGGGGuCCGagUGCGaGGU- -5'
11000 5' -60.8 NC_002794.1 + 71373 0.75 0.263689
Target:  5'- gGCAGCCGCCCCAGGaccuccucCACGgUCUg -3'
miRNA:   3'- aUGUCGGUGGGGUCCga------GUGCgAGGu -5'
11000 5' -60.8 NC_002794.1 + 71538 0.69 0.535258
Target:  5'- aACAGCU-CCUuggaCAGGCUCAgcUGCUCCAc -3'
miRNA:   3'- aUGUCGGuGGG----GUCCGAGU--GCGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 78987 0.68 0.623542
Target:  5'- cUGCGGCCGCUCCcGGagUCGCGgcgaCUCCAu -3'
miRNA:   3'- -AUGUCGGUGGGGuCCg-AGUGC----GAGGU- -5'
11000 5' -60.8 NC_002794.1 + 79046 0.66 0.731427
Target:  5'- -cCGGCCGCuCCCGcGCUCGCuCUUCAc -3'
miRNA:   3'- auGUCGGUG-GGGUcCGAGUGcGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 81139 0.67 0.663218
Target:  5'- cACGGCCGCUCCAuccGGCUC-CcCUUCAu -3'
miRNA:   3'- aUGUCGGUGGGGU---CCGAGuGcGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 81201 0.66 0.740914
Target:  5'- gUACGGCCGCCU---GCUCcCGCUCUu -3'
miRNA:   3'- -AUGUCGGUGGGgucCGAGuGCGAGGu -5'
11000 5' -60.8 NC_002794.1 + 83881 0.7 0.488057
Target:  5'- cGCGaCgGCCCCGGGCUCgGCGC-CCGa -3'
miRNA:   3'- aUGUcGgUGGGGUCCGAG-UGCGaGGU- -5'
11000 5' -60.8 NC_002794.1 + 84207 0.71 0.451751
Target:  5'- -cCA-CCACCCCGGGC--GCGCUCCc -3'
miRNA:   3'- auGUcGGUGGGGUCCGagUGCGAGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.