miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11000 5' -60.8 NC_002794.1 + 195506 0.71 0.442907
Target:  5'- --aAGCCGCCCC-GGCaCACGC-CCAc -3'
miRNA:   3'- augUCGGUGGGGuCCGaGUGCGaGGU- -5'
11000 5' -60.8 NC_002794.1 + 194448 0.66 0.71125
Target:  5'- -cCGGCCGCUccuuaaaCCAGuaGC-CGCGCUCCAg -3'
miRNA:   3'- auGUCGGUGG-------GGUC--CGaGUGCGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 193992 0.66 0.692753
Target:  5'- cUACcGCCGCCCCcGGCuUCGC-CUUCGc -3'
miRNA:   3'- -AUGuCGGUGGGGuCCG-AGUGcGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 193362 0.74 0.309097
Target:  5'- aGCAGCCgguGCCaCGGGC-CGCGCUCCu -3'
miRNA:   3'- aUGUCGG---UGGgGUCCGaGUGCGAGGu -5'
11000 5' -60.8 NC_002794.1 + 192636 0.71 0.434161
Target:  5'- gGCGGCCGCUCCAGccGCgccgccgCGCGCUCg- -3'
miRNA:   3'- aUGUCGGUGGGGUC--CGa------GUGCGAGgu -5'
11000 5' -60.8 NC_002794.1 + 189576 0.66 0.712218
Target:  5'- -uCGGCCGgCCCGGGCcgGCGCcCCu -3'
miRNA:   3'- auGUCGGUgGGGUCCGagUGCGaGGu -5'
11000 5' -60.8 NC_002794.1 + 186873 0.68 0.593824
Target:  5'- aGCAGCgGgCUC-GGCUCGCGgUCCGg -3'
miRNA:   3'- aUGUCGgUgGGGuCCGAGUGCgAGGU- -5'
11000 5' -60.8 NC_002794.1 + 185987 0.69 0.525678
Target:  5'- ---cGCCACCgucuccuccgCCGGGCUCcgcCGCUCCGg -3'
miRNA:   3'- auguCGGUGG----------GGUCCGAGu--GCGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 185933 0.74 0.28894
Target:  5'- -cCGGCCACCcgCCAGGCUCGCGg-CCGc -3'
miRNA:   3'- auGUCGGUGG--GGUCCGAGUGCgaGGU- -5'
11000 5' -60.8 NC_002794.1 + 185310 0.66 0.702513
Target:  5'- -cCGGUCGCCCCAGugUCGC-CUCCAc -3'
miRNA:   3'- auGUCGGUGGGGUCcgAGUGcGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 185003 0.74 0.274824
Target:  5'- gGCGGCCGCCCaCGGGaCUCAgcacggugaccaGCUCCAa -3'
miRNA:   3'- aUGUCGGUGGG-GUCC-GAGUg-----------CGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 184966 0.67 0.663218
Target:  5'- cGCAGCCGCUcgUCGGGCagCACGCagCGc -3'
miRNA:   3'- aUGUCGGUGG--GGUCCGa-GUGCGagGU- -5'
11000 5' -60.8 NC_002794.1 + 184457 0.69 0.544899
Target:  5'- cGCuGCCGCCCgCGGGC-CGCGCgaaCGg -3'
miRNA:   3'- aUGuCGGUGGG-GUCCGaGUGCGag-GU- -5'
11000 5' -60.8 NC_002794.1 + 181833 0.72 0.375882
Target:  5'- cGCGGCCAggUCCCGGGCgagcUCGCaCUCCAu -3'
miRNA:   3'- aUGUCGGU--GGGGUCCG----AGUGcGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 152184 0.66 0.731427
Target:  5'- gUGCAGCUACCUgaaCAcGG-UCGCGUUCCGc -3'
miRNA:   3'- -AUGUCGGUGGG---GU-CCgAGUGCGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 152122 0.66 0.740914
Target:  5'- cUGC-GCCGCUCCGcccugccgagccGGUUCAaccCGCUCCAg -3'
miRNA:   3'- -AUGuCGGUGGGGU------------CCGAGU---GCGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 151691 0.66 0.740914
Target:  5'- cUugGGUCGCCCCGccGGCcgaGCGCgCCAg -3'
miRNA:   3'- -AugUCGGUGGGGU--CCGag-UGCGaGGU- -5'
11000 5' -60.8 NC_002794.1 + 151594 0.66 0.702513
Target:  5'- cGCcGCCGCCgCGGGCcCGCgGUUCCu -3'
miRNA:   3'- aUGuCGGUGGgGUCCGaGUG-CGAGGu -5'
11000 5' -60.8 NC_002794.1 + 148430 0.71 0.425515
Target:  5'- aGCAcGCCgGCUCCuGGCUgGCGCUCUAc -3'
miRNA:   3'- aUGU-CGG-UGGGGuCCGAgUGCGAGGU- -5'
11000 5' -60.8 NC_002794.1 + 145421 0.67 0.682945
Target:  5'- cGCGGCgCGCCgCCGucGGCUCACgaGCUCgCGa -3'
miRNA:   3'- aUGUCG-GUGG-GGU--CCGAGUG--CGAG-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.