miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11001 3' -57.4 NC_002794.1 + 108815 0.66 0.928592
Target:  5'- -aGGUGCaacGCUUCgGCGUcgGCgGCUUCCg -3'
miRNA:   3'- ggUCACGc--UGAAG-CGCA--CGgCGAGGG- -5'
11001 3' -57.4 NC_002794.1 + 67012 0.66 0.923433
Target:  5'- aCgAGUccgGCGGCg--GCG-GCCGgCUCCCg -3'
miRNA:   3'- -GgUCA---CGCUGaagCGCaCGGC-GAGGG- -5'
11001 3' -57.4 NC_002794.1 + 70920 0.66 0.921842
Target:  5'- gCCAGgcgaaaggugcccuUGCGAC-UCGCGaacaCGCUCUCg -3'
miRNA:   3'- -GGUC--------------ACGCUGaAGCGCacg-GCGAGGG- -5'
11001 3' -57.4 NC_002794.1 + 90716 0.66 0.918053
Target:  5'- -uGGUGCGACgugcUCGCGgcccUGUCGCUgugcgaCCg -3'
miRNA:   3'- ggUCACGCUGa---AGCGC----ACGGCGAg-----GG- -5'
11001 3' -57.4 NC_002794.1 + 78386 0.66 0.914719
Target:  5'- gCCAGcgacgGCGACgacgaggccucgcCGCGacucuCCGCUCCCg -3'
miRNA:   3'- -GGUCa----CGCUGaa-----------GCGCac---GGCGAGGG- -5'
11001 3' -57.4 NC_002794.1 + 145563 0.66 0.900594
Target:  5'- aCCGGUucgcggacgagcGcCGACggaGCGgcgGCCGgCUCCCg -3'
miRNA:   3'- -GGUCA------------C-GCUGaagCGCa--CGGC-GAGGG- -5'
11001 3' -57.4 NC_002794.1 + 180662 0.66 0.900594
Target:  5'- gCAGgGCGugccggggaACU-CGcCG-GCCGCUCCCg -3'
miRNA:   3'- gGUCaCGC---------UGAaGC-GCaCGGCGAGGG- -5'
11001 3' -57.4 NC_002794.1 + 182248 0.66 0.900594
Target:  5'- gCCAGgaggaGCGACa--GCGcGCCGagUCCCg -3'
miRNA:   3'- -GGUCa----CGCUGaagCGCaCGGCg-AGGG- -5'
11001 3' -57.4 NC_002794.1 + 89278 0.66 0.900594
Target:  5'- aCGGUGUgGACgau-CGUGUCGCUCuCCg -3'
miRNA:   3'- gGUCACG-CUGaagcGCACGGCGAG-GG- -5'
11001 3' -57.4 NC_002794.1 + 36255 0.66 0.900594
Target:  5'- gUAGU-CGAUggcgUCGUGUaacGCCGCgUCCCg -3'
miRNA:   3'- gGUCAcGCUGa---AGCGCA---CGGCG-AGGG- -5'
11001 3' -57.4 NC_002794.1 + 14667 0.67 0.89434
Target:  5'- gUCGGUcCGAC-UCGCGgcggcggucgcGCUGCUCCUg -3'
miRNA:   3'- -GGUCAcGCUGaAGCGCa----------CGGCGAGGG- -5'
11001 3' -57.4 NC_002794.1 + 184430 0.67 0.89434
Target:  5'- -aGGUGCaGACUguacaucugaGCGcGCCGCUgCCg -3'
miRNA:   3'- ggUCACG-CUGAag--------CGCaCGGCGAgGG- -5'
11001 3' -57.4 NC_002794.1 + 89545 0.67 0.89434
Target:  5'- gCAGacGCGACggaggagCGuCGUGCCGagcgUCCCg -3'
miRNA:   3'- gGUCa-CGCUGaa-----GC-GCACGGCg---AGGG- -5'
11001 3' -57.4 NC_002794.1 + 176236 0.67 0.887875
Target:  5'- cCCGGUGuCGAUauccgUCGaugGUGCCGagagCCCa -3'
miRNA:   3'- -GGUCAC-GCUGa----AGCg--CACGGCga--GGG- -5'
11001 3' -57.4 NC_002794.1 + 127361 0.67 0.887875
Target:  5'- ----gGCGGCggCGCG-GCCGCUCg- -3'
miRNA:   3'- ggucaCGCUGaaGCGCaCGGCGAGgg -5'
11001 3' -57.4 NC_002794.1 + 94477 0.67 0.887875
Target:  5'- aCGGcgGCGGCggaCGCG-GCCGCgggCCg -3'
miRNA:   3'- gGUCa-CGCUGaa-GCGCaCGGCGa--GGg -5'
11001 3' -57.4 NC_002794.1 + 190989 0.67 0.887875
Target:  5'- gCAGcgcgGCGACggcgUCGCGaucgGCCGUUCg- -3'
miRNA:   3'- gGUCa---CGCUGa---AGCGCa---CGGCGAGgg -5'
11001 3' -57.4 NC_002794.1 + 59128 0.67 0.887875
Target:  5'- aCCgAG-GcCGACUUCGCGcaggGCCGCgUCgCg -3'
miRNA:   3'- -GG-UCaC-GCUGAAGCGCa---CGGCG-AGgG- -5'
11001 3' -57.4 NC_002794.1 + 70869 0.67 0.8812
Target:  5'- uCCGGcgGCGGCa--GCG-GCgGCUCCUc -3'
miRNA:   3'- -GGUCa-CGCUGaagCGCaCGgCGAGGG- -5'
11001 3' -57.4 NC_002794.1 + 112391 0.67 0.874319
Target:  5'- gCAGggcgGCGAuCUUgGCGcGCUGCagCCCa -3'
miRNA:   3'- gGUCa---CGCU-GAAgCGCaCGGCGa-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.