miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11001 3' -57.4 NC_002794.1 + 66875 0.78 0.332918
Target:  5'- --cGUGCGGCUgagccaUCGCG-GCCGaCUCCCg -3'
miRNA:   3'- gguCACGCUGA------AGCGCaCGGC-GAGGG- -5'
11001 3' -57.4 NC_002794.1 + 194507 0.77 0.370515
Target:  5'- cCCGGcccGCGGCc-CGCGUGCCGCcggCCCa -3'
miRNA:   3'- -GGUCa--CGCUGaaGCGCACGGCGa--GGG- -5'
11001 3' -57.4 NC_002794.1 + 30081 0.74 0.499276
Target:  5'- cCCGGU-CGACgaggCGCGcgGCCGgUCCCg -3'
miRNA:   3'- -GGUCAcGCUGaa--GCGCa-CGGCgAGGG- -5'
11001 3' -57.4 NC_002794.1 + 189516 0.74 0.508589
Target:  5'- uCCGucGCGGaucagCGgGUGCCGCUCCCa -3'
miRNA:   3'- -GGUcaCGCUgaa--GCgCACGGCGAGGG- -5'
11001 3' -57.4 NC_002794.1 + 79662 0.74 0.517976
Target:  5'- aCCAcGcGCGACUaCGCGcGCUGCUUCCu -3'
miRNA:   3'- -GGU-CaCGCUGAaGCGCaCGGCGAGGG- -5'
11001 3' -57.4 NC_002794.1 + 22819 0.74 0.536948
Target:  5'- aCC-GU-CGuCUUCGCGUcGCCGCUCCUu -3'
miRNA:   3'- -GGuCAcGCuGAAGCGCA-CGGCGAGGG- -5'
11001 3' -57.4 NC_002794.1 + 192618 0.73 0.585317
Target:  5'- gCCAgGUGCGGacagUCGgGcgGCCGCUCCa -3'
miRNA:   3'- -GGU-CACGCUga--AGCgCa-CGGCGAGGg -5'
11001 3' -57.4 NC_002794.1 + 67422 0.72 0.624606
Target:  5'- gCCAGcgucgGCGGCgugUCGCGccGCUucggGCUCCCg -3'
miRNA:   3'- -GGUCa----CGCUGa--AGCGCa-CGG----CGAGGG- -5'
11001 3' -57.4 NC_002794.1 + 140002 0.72 0.624606
Target:  5'- aCGGUGCGGgUggaggcCGCGgagGCCGCggCCCc -3'
miRNA:   3'- gGUCACGCUgAa-----GCGCa--CGGCGa-GGG- -5'
11001 3' -57.4 NC_002794.1 + 152782 0.72 0.644308
Target:  5'- gCCAGacGCuGACcgCGCGcgagcUGCUGCUCCCg -3'
miRNA:   3'- -GGUCa-CG-CUGaaGCGC-----ACGGCGAGGG- -5'
11001 3' -57.4 NC_002794.1 + 147321 0.71 0.651199
Target:  5'- --cGUGCGGCUcuucggggccgaucUCGUGcGCCGCUgCCa -3'
miRNA:   3'- gguCACGCUGA--------------AGCGCaCGGCGAgGG- -5'
11001 3' -57.4 NC_002794.1 + 64848 0.71 0.663975
Target:  5'- aCGGcGCGGCggcaccUCGaCGUGCCGCUCg- -3'
miRNA:   3'- gGUCaCGCUGa-----AGC-GCACGGCGAGgg -5'
11001 3' -57.4 NC_002794.1 + 102344 0.71 0.693278
Target:  5'- cCUGGUGCgcaaGACg--GCGUGCCGCUUCg -3'
miRNA:   3'- -GGUCACG----CUGaagCGCACGGCGAGGg -5'
11001 3' -57.4 NC_002794.1 + 114143 0.7 0.722154
Target:  5'- gCCAGggcGCGcagGCgcCGCGUcaGCCGCUCCa -3'
miRNA:   3'- -GGUCa--CGC---UGaaGCGCA--CGGCGAGGg -5'
11001 3' -57.4 NC_002794.1 + 21936 0.7 0.722154
Target:  5'- gCGGcGCGGCgcucgUCGaaggcCGUcgGCCGCUCCCg -3'
miRNA:   3'- gGUCaCGCUGa----AGC-----GCA--CGGCGAGGG- -5'
11001 3' -57.4 NC_002794.1 + 182823 0.7 0.730701
Target:  5'- uCCAGccGCGGCacCgacacgaccaccaGCGUGCCGCUCgCCg -3'
miRNA:   3'- -GGUCa-CGCUGaaG-------------CGCACGGCGAG-GG- -5'
11001 3' -57.4 NC_002794.1 + 71352 0.7 0.731647
Target:  5'- gCCAG-GCGGCgcagcaggUGCGgcaGCCGC-CCCa -3'
miRNA:   3'- -GGUCaCGCUGaa------GCGCa--CGGCGaGGG- -5'
11001 3' -57.4 NC_002794.1 + 138603 0.7 0.758695
Target:  5'- gCGGagaGCGGCUuugugagUCGCGaUGCCGCUUCg -3'
miRNA:   3'- gGUCa--CGCUGA-------AGCGC-ACGGCGAGGg -5'
11001 3' -57.4 NC_002794.1 + 66429 0.69 0.768737
Target:  5'- gCGGuUGCGACcgUCGUuucuGUccGCCGCUCCUc -3'
miRNA:   3'- gGUC-ACGCUGa-AGCG----CA--CGGCGAGGG- -5'
11001 3' -57.4 NC_002794.1 + 626 0.69 0.768737
Target:  5'- cCCGGUGUGGCgUUCGCcucCCGUcCCCg -3'
miRNA:   3'- -GGUCACGCUG-AAGCGcacGGCGaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.