miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11001 3' -57.4 NC_002794.1 + 107879 0.67 0.874319
Target:  5'- gCGGagGCGGCgcggCGgGUGCgGCUgCCg -3'
miRNA:   3'- gGUCa-CGCUGaa--GCgCACGgCGAgGG- -5'
11001 3' -57.4 NC_002794.1 + 102071 0.67 0.867239
Target:  5'- gCCGG-GCGACcugcCGCGggccgacgaGCCGCcgCCCa -3'
miRNA:   3'- -GGUCaCGCUGaa--GCGCa--------CGGCGa-GGG- -5'
11001 3' -57.4 NC_002794.1 + 123741 0.67 0.867239
Target:  5'- aCCGG-GCGuucccgaGcCGUGCCGCUuCCCg -3'
miRNA:   3'- -GGUCaCGCugaag--C-GCACGGCGA-GGG- -5'
11001 3' -57.4 NC_002794.1 + 92188 0.67 0.867239
Target:  5'- uCCuGUGCGACgUCGaCGUGCUcgGCaCCUu -3'
miRNA:   3'- -GGuCACGCUGaAGC-GCACGG--CGaGGG- -5'
11001 3' -57.4 NC_002794.1 + 122949 0.67 0.865076
Target:  5'- aCCGGUGCGGCUggaGCGUgaGCCugggguggcuguacGCgcgCCUg -3'
miRNA:   3'- -GGUCACGCUGAag-CGCA--CGG--------------CGa--GGG- -5'
11001 3' -57.4 NC_002794.1 + 100768 0.67 0.865076
Target:  5'- gCCGGUcGCGgaguacacgcgccuGCgguUCGCG-GCCGCUUCUg -3'
miRNA:   3'- -GGUCA-CGC--------------UGa--AGCGCaCGGCGAGGG- -5'
11001 3' -57.4 NC_002794.1 + 78978 0.67 0.859962
Target:  5'- aCAcUGCuGCU--GCG-GCCGCUCCCg -3'
miRNA:   3'- gGUcACGcUGAagCGCaCGGCGAGGG- -5'
11001 3' -57.4 NC_002794.1 + 124385 0.67 0.859962
Target:  5'- cUCGGUcGCGGCggCGCGUcGCCGgUCg- -3'
miRNA:   3'- -GGUCA-CGCUGaaGCGCA-CGGCgAGgg -5'
11001 3' -57.4 NC_002794.1 + 55300 0.67 0.859962
Target:  5'- gCGGcgGCGGCgUCGCGgcgggcgcggGCgGCUUCCg -3'
miRNA:   3'- gGUCa-CGCUGaAGCGCa---------CGgCGAGGG- -5'
11001 3' -57.4 NC_002794.1 + 106666 0.67 0.859224
Target:  5'- gCCGG-GCGGugUCGCuGUGCUGCUacguacgCCCg -3'
miRNA:   3'- -GGUCaCGCUgaAGCG-CACGGCGA-------GGG- -5'
11001 3' -57.4 NC_002794.1 + 879 0.68 0.855504
Target:  5'- gCGGU-CGGCgugcgCGCGggccgggugccaacGCCGCUCCCc -3'
miRNA:   3'- gGUCAcGCUGaa---GCGCa-------------CGGCGAGGG- -5'
11001 3' -57.4 NC_002794.1 + 33209 0.68 0.852494
Target:  5'- aCAGUGCGACggUGCG-GCaGgUCUCg -3'
miRNA:   3'- gGUCACGCUGaaGCGCaCGgCgAGGG- -5'
11001 3' -57.4 NC_002794.1 + 71593 0.68 0.852494
Target:  5'- uCCAcUGCGGCUggGCGaacagcaGCCGCUugaCCCg -3'
miRNA:   3'- -GGUcACGCUGAagCGCa------CGGCGA---GGG- -5'
11001 3' -57.4 NC_002794.1 + 152561 0.68 0.852494
Target:  5'- gCCAGgaGCGGCgcuucaccgcCGCGgcgGCCGCcacgUCCCu -3'
miRNA:   3'- -GGUCa-CGCUGaa--------GCGCa--CGGCG----AGGG- -5'
11001 3' -57.4 NC_002794.1 + 140687 0.68 0.852494
Target:  5'- gUCGGUGCGACggacCGgccGCCGCgaCCCg -3'
miRNA:   3'- -GGUCACGCUGaagcGCa--CGGCGa-GGG- -5'
11001 3' -57.4 NC_002794.1 + 33441 0.68 0.844842
Target:  5'- cCCGGUGCagGACcUCGgGcgGCCGCcggacgcgCCCa -3'
miRNA:   3'- -GGUCACG--CUGaAGCgCa-CGGCGa-------GGG- -5'
11001 3' -57.4 NC_002794.1 + 33038 0.68 0.829006
Target:  5'- gCGGaGcCGACgccaUCGaCGUGCUGUUCCCc -3'
miRNA:   3'- gGUCaC-GCUGa---AGC-GCACGGCGAGGG- -5'
11001 3' -57.4 NC_002794.1 + 4222 0.68 0.820836
Target:  5'- aCCGGUGUgggcgugucuaGACgUCG-GUGCgGCUCUCg -3'
miRNA:   3'- -GGUCACG-----------CUGaAGCgCACGgCGAGGG- -5'
11001 3' -57.4 NC_002794.1 + 102465 0.69 0.795401
Target:  5'- -gAGaUGCGGCgcgUCgGCGUGCCggccgGCUUCCa -3'
miRNA:   3'- ggUC-ACGCUGa--AG-CGCACGG-----CGAGGG- -5'
11001 3' -57.4 NC_002794.1 + 63814 0.69 0.777749
Target:  5'- cCCGcacCGACUUCGCGaucgGCCGCUCg- -3'
miRNA:   3'- -GGUcacGCUGAAGCGCa---CGGCGAGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.