miRNA display CGI


Results 1 - 20 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11001 3' -57.4 NC_002794.1 + 626 0.69 0.768737
Target:  5'- cCCGGUGUGGCgUUCGCcucCCGUcCCCg -3'
miRNA:   3'- -GGUCACGCUG-AAGCGcacGGCGaGGG- -5'
11001 3' -57.4 NC_002794.1 + 879 0.68 0.855504
Target:  5'- gCGGU-CGGCgugcgCGCGggccgggugccaacGCCGCUCCCc -3'
miRNA:   3'- gGUCAcGCUGaa---GCGCa-------------CGGCGAGGG- -5'
11001 3' -57.4 NC_002794.1 + 4222 0.68 0.820836
Target:  5'- aCCGGUGUgggcgugucuaGACgUCG-GUGCgGCUCUCg -3'
miRNA:   3'- -GGUCACG-----------CUGaAGCgCACGgCGAGGG- -5'
11001 3' -57.4 NC_002794.1 + 14667 0.67 0.89434
Target:  5'- gUCGGUcCGAC-UCGCGgcggcggucgcGCUGCUCCUg -3'
miRNA:   3'- -GGUCAcGCUGaAGCGCa----------CGGCGAGGG- -5'
11001 3' -57.4 NC_002794.1 + 21936 0.7 0.722154
Target:  5'- gCGGcGCGGCgcucgUCGaaggcCGUcgGCCGCUCCCg -3'
miRNA:   3'- gGUCaCGCUGa----AGC-----GCA--CGGCGAGGG- -5'
11001 3' -57.4 NC_002794.1 + 22819 0.74 0.536948
Target:  5'- aCC-GU-CGuCUUCGCGUcGCCGCUCCUu -3'
miRNA:   3'- -GGuCAcGCuGAAGCGCA-CGGCGAGGG- -5'
11001 3' -57.4 NC_002794.1 + 30081 0.74 0.499276
Target:  5'- cCCGGU-CGACgaggCGCGcgGCCGgUCCCg -3'
miRNA:   3'- -GGUCAcGCUGaa--GCGCa-CGGCgAGGG- -5'
11001 3' -57.4 NC_002794.1 + 33038 0.68 0.829006
Target:  5'- gCGGaGcCGACgccaUCGaCGUGCUGUUCCCc -3'
miRNA:   3'- gGUCaC-GCUGa---AGC-GCACGGCGAGGG- -5'
11001 3' -57.4 NC_002794.1 + 33209 0.68 0.852494
Target:  5'- aCAGUGCGACggUGCG-GCaGgUCUCg -3'
miRNA:   3'- gGUCACGCUGaaGCGCaCGgCgAGGG- -5'
11001 3' -57.4 NC_002794.1 + 33441 0.68 0.844842
Target:  5'- cCCGGUGCagGACcUCGgGcgGCCGCcggacgcgCCCa -3'
miRNA:   3'- -GGUCACG--CUGaAGCgCa-CGGCGa-------GGG- -5'
11001 3' -57.4 NC_002794.1 + 36255 0.66 0.900594
Target:  5'- gUAGU-CGAUggcgUCGUGUaacGCCGCgUCCCg -3'
miRNA:   3'- gGUCAcGCUGa---AGCGCA---CGGCG-AGGG- -5'
11001 3' -57.4 NC_002794.1 + 55300 0.67 0.859962
Target:  5'- gCGGcgGCGGCgUCGCGgcgggcgcggGCgGCUUCCg -3'
miRNA:   3'- gGUCa-CGCUGaAGCGCa---------CGgCGAGGG- -5'
11001 3' -57.4 NC_002794.1 + 59128 0.67 0.887875
Target:  5'- aCCgAG-GcCGACUUCGCGcaggGCCGCgUCgCg -3'
miRNA:   3'- -GG-UCaC-GCUGAAGCGCa---CGGCG-AGgG- -5'
11001 3' -57.4 NC_002794.1 + 61172 0.69 0.777749
Target:  5'- uCCGGaucgGCGGCUggUCGCucGUGCUGC-CCUg -3'
miRNA:   3'- -GGUCa---CGCUGA--AGCG--CACGGCGaGGG- -5'
11001 3' -57.4 NC_002794.1 + 63814 0.69 0.777749
Target:  5'- cCCGcacCGACUUCGCGaucgGCCGCUCg- -3'
miRNA:   3'- -GGUcacGCUGAAGCGCa---CGGCGAGgg -5'
11001 3' -57.4 NC_002794.1 + 64848 0.71 0.663975
Target:  5'- aCGGcGCGGCggcaccUCGaCGUGCCGCUCg- -3'
miRNA:   3'- gGUCaCGCUGa-----AGC-GCACGGCGAGgg -5'
11001 3' -57.4 NC_002794.1 + 66429 0.69 0.768737
Target:  5'- gCGGuUGCGACcgUCGUuucuGUccGCCGCUCCUc -3'
miRNA:   3'- gGUC-ACGCUGa-AGCG----CA--CGGCGAGGG- -5'
11001 3' -57.4 NC_002794.1 + 66875 0.78 0.332918
Target:  5'- --cGUGCGGCUgagccaUCGCG-GCCGaCUCCCg -3'
miRNA:   3'- gguCACGCUGA------AGCGCaCGGC-GAGGG- -5'
11001 3' -57.4 NC_002794.1 + 67012 0.66 0.923433
Target:  5'- aCgAGUccgGCGGCg--GCG-GCCGgCUCCCg -3'
miRNA:   3'- -GgUCA---CGCUGaagCGCaCGGC-GAGGG- -5'
11001 3' -57.4 NC_002794.1 + 67422 0.72 0.624606
Target:  5'- gCCAGcgucgGCGGCgugUCGCGccGCUucggGCUCCCg -3'
miRNA:   3'- -GGUCa----CGCUGa--AGCGCa-CGG----CGAGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.