miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11001 5' -54.1 NC_002794.1 + 53255 0.66 0.977352
Target:  5'- cGCcGGcgUCGccGCGCGacaacggGGCGGCGAGCg -3'
miRNA:   3'- -UGuCCa-AGC--CGUGCaa-----CUGCCGCUUG- -5'
11001 5' -54.1 NC_002794.1 + 116640 0.66 0.977352
Target:  5'- gGCAGGggccCGGC-CGUccggcucuUGAggcgcugcuCGGCGAGCg -3'
miRNA:   3'- -UGUCCaa--GCCGuGCA--------ACU---------GCCGCUUG- -5'
11001 5' -54.1 NC_002794.1 + 107529 0.66 0.977352
Target:  5'- gACGGc--CGGCGCGgcgccGGCGGCGAc- -3'
miRNA:   3'- -UGUCcaaGCCGUGCaa---CUGCCGCUug -5'
11001 5' -54.1 NC_002794.1 + 18698 0.66 0.977352
Target:  5'- ------cCGGCACGgcGGCGGCGGu- -3'
miRNA:   3'- uguccaaGCCGUGCaaCUGCCGCUug -5'
11001 5' -54.1 NC_002794.1 + 107236 0.66 0.977114
Target:  5'- gACGGGggCGGCGuCGcgGAccuggccCGGCGGAg -3'
miRNA:   3'- -UGUCCaaGCCGU-GCaaCU-------GCCGCUUg -5'
11001 5' -54.1 NC_002794.1 + 94782 0.66 0.976873
Target:  5'- cGCuGGgcgaguucgagCGGCACGggGAUGGC-AGCg -3'
miRNA:   3'- -UGuCCaa---------GCCGUGCaaCUGCCGcUUG- -5'
11001 5' -54.1 NC_002794.1 + 82118 0.66 0.974883
Target:  5'- cGCAGccuccUCGGCguggGCGUcacGugGGCGGACa -3'
miRNA:   3'- -UGUCca---AGCCG----UGCAa--CugCCGCUUG- -5'
11001 5' -54.1 NC_002794.1 + 71220 0.66 0.974883
Target:  5'- -aAGGUccCGGcCGCGUagUGGCGGCcGGCg -3'
miRNA:   3'- ugUCCAa-GCC-GUGCA--ACUGCCGcUUG- -5'
11001 5' -54.1 NC_002794.1 + 141402 0.66 0.974625
Target:  5'- -gGGGcUCGGCGacgacgaugaccuCGggGGCGGCGGGg -3'
miRNA:   3'- ugUCCaAGCCGU-------------GCaaCUGCCGCUUg -5'
11001 5' -54.1 NC_002794.1 + 155454 0.66 0.972222
Target:  5'- aACAGcc-CGGCGCGUUGAUaGGCuuuauGGACg -3'
miRNA:   3'- -UGUCcaaGCCGUGCAACUG-CCG-----CUUG- -5'
11001 5' -54.1 NC_002794.1 + 147218 0.66 0.972222
Target:  5'- cCGGGgcCGGgGCGUUGGC-GCGAu- -3'
miRNA:   3'- uGUCCaaGCCgUGCAACUGcCGCUug -5'
11001 5' -54.1 NC_002794.1 + 94015 0.66 0.972222
Target:  5'- gGCGGGc-CGGCGgGUUccGcCGGCGGGCc -3'
miRNA:   3'- -UGUCCaaGCCGUgCAA--CuGCCGCUUG- -5'
11001 5' -54.1 NC_002794.1 + 182321 0.66 0.966303
Target:  5'- gACGGGcggUCGG-GCGggcgGGCGaGCGGACg -3'
miRNA:   3'- -UGUCCa--AGCCgUGCaa--CUGC-CGCUUG- -5'
11001 5' -54.1 NC_002794.1 + 140089 0.66 0.966303
Target:  5'- aGCAGGacguccauggUCGGCggcgaucgacgGCGgucGACGGUGGGCg -3'
miRNA:   3'- -UGUCCa---------AGCCG-----------UGCaa-CUGCCGCUUG- -5'
11001 5' -54.1 NC_002794.1 + 95761 0.66 0.966303
Target:  5'- cGCGGGgcggCGGC-CGc-GACGGCGGc- -3'
miRNA:   3'- -UGUCCaa--GCCGuGCaaCUGCCGCUug -5'
11001 5' -54.1 NC_002794.1 + 90833 0.67 0.963032
Target:  5'- uCAG--UCGGUACGagGGCGGCGuGCu -3'
miRNA:   3'- uGUCcaAGCCGUGCaaCUGCCGCuUG- -5'
11001 5' -54.1 NC_002794.1 + 129380 0.67 0.961664
Target:  5'- gACGGucucgaGUaCGGCGCGUgucugauuuuugaGACGGUGAACg -3'
miRNA:   3'- -UGUC------CAaGCCGUGCAa------------CUGCCGCUUG- -5'
11001 5' -54.1 NC_002794.1 + 143315 0.67 0.959547
Target:  5'- gGCGGGauggaagUCGGuCGCGUgcucgGGCaGCGGGCu -3'
miRNA:   3'- -UGUCCa------AGCC-GUGCAa----CUGcCGCUUG- -5'
11001 5' -54.1 NC_002794.1 + 129929 0.67 0.959547
Target:  5'- cCAGGccgUGGCgACGgcGGCGGCGGcgGCu -3'
miRNA:   3'- uGUCCaa-GCCG-UGCaaCUGCCGCU--UG- -5'
11001 5' -54.1 NC_002794.1 + 55296 0.67 0.959547
Target:  5'- -gAGGgcggCGGCgGCGUc-GCGGCGGGCg -3'
miRNA:   3'- ugUCCaa--GCCG-UGCAacUGCCGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.