miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11001 5' -54.1 NC_002794.1 + 141452 0.75 0.602271
Target:  5'- cCGGGagCGGCGCGgcguccgGACuGGCGAGCa -3'
miRNA:   3'- uGUCCaaGCCGUGCaa-----CUG-CCGCUUG- -5'
11001 5' -54.1 NC_002794.1 + 87339 0.74 0.673495
Target:  5'- gGCAGGUUCcccaGCAgCGgguccGGCGGCGAGCg -3'
miRNA:   3'- -UGUCCAAGc---CGU-GCaa---CUGCCGCUUG- -5'
11001 5' -54.1 NC_002794.1 + 112365 0.74 0.679564
Target:  5'- gGCGGGgagcugcuggaacUCGGCACGcagGGCGGCGAu- -3'
miRNA:   3'- -UGUCCa------------AGCCGUGCaa-CUGCCGCUug -5'
11001 5' -54.1 NC_002794.1 + 94463 0.72 0.771596
Target:  5'- --cGGUggcgaCGGCaACGgcGGCGGCGGACg -3'
miRNA:   3'- uguCCAa----GCCG-UGCaaCUGCCGCUUG- -5'
11001 5' -54.1 NC_002794.1 + 119433 0.72 0.790026
Target:  5'- cGCAGGUccgaCGGCgGCGgcggUGGCGGCGucGACu -3'
miRNA:   3'- -UGUCCAa---GCCG-UGCa---ACUGCCGC--UUG- -5'
11001 5' -54.1 NC_002794.1 + 71296 0.71 0.799033
Target:  5'- aAUAGccgcCGGCGCGcucgGGCGGCGAGCg -3'
miRNA:   3'- -UGUCcaa-GCCGUGCaa--CUGCCGCUUG- -5'
11001 5' -54.1 NC_002794.1 + 106369 0.71 0.799033
Target:  5'- cGCcGGUUC-GCGCGgagggcaGACGGCGGGCg -3'
miRNA:   3'- -UGuCCAAGcCGUGCaa-----CUGCCGCUUG- -5'
11001 5' -54.1 NC_002794.1 + 106978 0.71 0.799033
Target:  5'- cGCGGcGgcCGGCACGgcggUGGCGGCGcuGGCc -3'
miRNA:   3'- -UGUC-CaaGCCGUGCa---ACUGCCGC--UUG- -5'
11001 5' -54.1 NC_002794.1 + 142307 0.71 0.807891
Target:  5'- uACAGGUggcggaggCGGCgGCGcaGGCGGCGGAg -3'
miRNA:   3'- -UGUCCAa-------GCCG-UGCaaCUGCCGCUUg -5'
11001 5' -54.1 NC_002794.1 + 94048 0.71 0.825126
Target:  5'- aGCGGcggCGGUGCGggGGCGGCGGGg -3'
miRNA:   3'- -UGUCcaaGCCGUGCaaCUGCCGCUUg -5'
11001 5' -54.1 NC_002794.1 + 8923 0.71 0.825126
Target:  5'- aGCAGGUggccgugCGcaccuGCACGaucGACGGCGGGCa -3'
miRNA:   3'- -UGUCCAa------GC-----CGUGCaa-CUGCCGCUUG- -5'
11001 5' -54.1 NC_002794.1 + 127358 0.7 0.841664
Target:  5'- cGCGGcggCGGCGCGgccgcucgUGuCGGCGGACg -3'
miRNA:   3'- -UGUCcaaGCCGUGCa-------ACuGCCGCUUG- -5'
11001 5' -54.1 NC_002794.1 + 21887 0.7 0.849653
Target:  5'- cGCGGGguguccgCGGCcuGCGUcgguggUGGCGGCGGAg -3'
miRNA:   3'- -UGUCCaa-----GCCG--UGCA------ACUGCCGCUUg -5'
11001 5' -54.1 NC_002794.1 + 48937 0.7 0.856677
Target:  5'- cCAGGcgcUCGGCGaccucuuCGcaGACGGCGAGCa -3'
miRNA:   3'- uGUCCa--AGCCGU-------GCaaCUGCCGCUUG- -5'
11001 5' -54.1 NC_002794.1 + 106342 0.7 0.872422
Target:  5'- --cGGUUCGcCGgGUcGACGGCGGGCg -3'
miRNA:   3'- uguCCAAGCcGUgCAaCUGCCGCUUG- -5'
11001 5' -54.1 NC_002794.1 + 154363 0.7 0.872422
Target:  5'- cGCGcGGUccaGGcCGCGgcGGCGGCGGGCa -3'
miRNA:   3'- -UGU-CCAag-CC-GUGCaaCUGCCGCUUG- -5'
11001 5' -54.1 NC_002794.1 + 99583 0.7 0.872422
Target:  5'- -gGGGUgcggagGGCGCGgcGGCGGCGcGCg -3'
miRNA:   3'- ugUCCAag----CCGUGCaaCUGCCGCuUG- -5'
11001 5' -54.1 NC_002794.1 + 153537 0.7 0.879593
Target:  5'- -gAGGUgggCGGCugGaUGccccACGGCGAAUa -3'
miRNA:   3'- ugUCCAa--GCCGugCaAC----UGCCGCUUG- -5'
11001 5' -54.1 NC_002794.1 + 126257 0.69 0.886545
Target:  5'- cGCgAGGUcggCGGCugGcUGGCGGCGcugGGCu -3'
miRNA:   3'- -UG-UCCAa--GCCGugCaACUGCCGC---UUG- -5'
11001 5' -54.1 NC_002794.1 + 55813 0.69 0.893273
Target:  5'- cCGGGcgCgGGCGCGcgcUGAUGGCGAAg -3'
miRNA:   3'- uGUCCaaG-CCGUGCa--ACUGCCGCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.