miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11001 5' -54.1 NC_002794.1 + 91209 0.67 0.955841
Target:  5'- cGCGGa--CGGCgACGc-GACGGCGGACg -3'
miRNA:   3'- -UGUCcaaGCCG-UGCaaCUGCCGCUUG- -5'
11001 5' -54.1 NC_002794.1 + 113707 0.67 0.955841
Target:  5'- cCAGGUUCuGGCucaggGACGGCGucGGCg -3'
miRNA:   3'- uGUCCAAG-CCGugcaaCUGCCGC--UUG- -5'
11001 5' -54.1 NC_002794.1 + 167269 0.67 0.955841
Target:  5'- uGguGGUUCGuaGCGUUGGCGaCGuGCg -3'
miRNA:   3'- -UguCCAAGCcgUGCAACUGCcGCuUG- -5'
11001 5' -54.1 NC_002794.1 + 118884 0.67 0.955458
Target:  5'- uGCAGG-UCGGCccgguguucGCGUagguccgUGGCGGUGGGg -3'
miRNA:   3'- -UGUCCaAGCCG---------UGCA-------ACUGCCGCUUg -5'
11001 5' -54.1 NC_002794.1 + 111107 0.67 0.951911
Target:  5'- gGCGGGaccgUGGC-CGUcGACGGCGccGGCg -3'
miRNA:   3'- -UGUCCaa--GCCGuGCAaCUGCCGC--UUG- -5'
11001 5' -54.1 NC_002794.1 + 190984 0.67 0.951911
Target:  5'- aGCAGG--CaGCGCGgcGACGGCGucGCg -3'
miRNA:   3'- -UGUCCaaGcCGUGCaaCUGCCGCu-UG- -5'
11001 5' -54.1 NC_002794.1 + 135605 0.67 0.947753
Target:  5'- uCGGGUcggaagcggaUCGGuCGCagGUUGAcguCGGCGAACa -3'
miRNA:   3'- uGUCCA----------AGCC-GUG--CAACU---GCCGCUUG- -5'
11001 5' -54.1 NC_002794.1 + 101258 0.67 0.947753
Target:  5'- aGCGGGgggccgccccCGGCGCcggUGGCGGCGGc- -3'
miRNA:   3'- -UGUCCaa--------GCCGUGca-ACUGCCGCUug -5'
11001 5' -54.1 NC_002794.1 + 95840 0.67 0.947753
Target:  5'- gGCGGcggCGGC-CGgggaGGCGGCGGGCg -3'
miRNA:   3'- -UGUCcaaGCCGuGCaa--CUGCCGCUUG- -5'
11001 5' -54.1 NC_002794.1 + 79428 0.67 0.947753
Target:  5'- -aAGGgccCGGCgGCGgcGGCGGCGAccgGCg -3'
miRNA:   3'- ugUCCaa-GCCG-UGCaaCUGCCGCU---UG- -5'
11001 5' -54.1 NC_002794.1 + 55274 0.67 0.947753
Target:  5'- -gGGGggCGGCGg--UGGCGGCGAc- -3'
miRNA:   3'- ugUCCaaGCCGUgcaACUGCCGCUug -5'
11001 5' -54.1 NC_002794.1 + 191896 0.68 0.943365
Target:  5'- gGCGGGaUCGGCACcggGAcCGGCuGAAUc -3'
miRNA:   3'- -UGUCCaAGCCGUGcaaCU-GCCG-CUUG- -5'
11001 5' -54.1 NC_002794.1 + 115917 0.68 0.938742
Target:  5'- -gGGGUggacUUGGCGCG---GCGGCGGGCc -3'
miRNA:   3'- ugUCCA----AGCCGUGCaacUGCCGCUUG- -5'
11001 5' -54.1 NC_002794.1 + 115271 0.68 0.938742
Target:  5'- gGCAGGUgaaCGGCGUGgacACGGgGAACg -3'
miRNA:   3'- -UGUCCAa--GCCGUGCaacUGCCgCUUG- -5'
11001 5' -54.1 NC_002794.1 + 86930 0.68 0.938742
Target:  5'- gGCGGGcaggCGGgGCGggaucCGGCGAGCg -3'
miRNA:   3'- -UGUCCaa--GCCgUGCaacu-GCCGCUUG- -5'
11001 5' -54.1 NC_002794.1 + 32872 0.68 0.933885
Target:  5'- gGCGGG--CGGCgGCGgcGGCGGCGGc- -3'
miRNA:   3'- -UGUCCaaGCCG-UGCaaCUGCCGCUug -5'
11001 5' -54.1 NC_002794.1 + 139459 0.68 0.933885
Target:  5'- gGCAGGUcgUCGuGCGCcagGACGGUGGu- -3'
miRNA:   3'- -UGUCCA--AGC-CGUGcaaCUGCCGCUug -5'
11001 5' -54.1 NC_002794.1 + 142218 0.68 0.933885
Target:  5'- gGCAGcggCGGUGCGggGAgCGGCGGAg -3'
miRNA:   3'- -UGUCcaaGCCGUGCaaCU-GCCGCUUg -5'
11001 5' -54.1 NC_002794.1 + 156074 0.68 0.933885
Target:  5'- aGCGGGcgUUGGCccACGgUGGCGuaGCGAACg -3'
miRNA:   3'- -UGUCCa-AGCCG--UGCaACUGC--CGCUUG- -5'
11001 5' -54.1 NC_002794.1 + 92306 0.68 0.933885
Target:  5'- gGCGGGgcugGGCGCG--GGCGGCGGGg -3'
miRNA:   3'- -UGUCCaag-CCGUGCaaCUGCCGCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.