miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11001 5' -54.1 NC_002794.1 + 8923 0.71 0.825126
Target:  5'- aGCAGGUggccgugCGcaccuGCACGaucGACGGCGGGCa -3'
miRNA:   3'- -UGUCCAa------GC-----CGUGCaa-CUGCCGCUUG- -5'
11001 5' -54.1 NC_002794.1 + 13266 0.69 0.899775
Target:  5'- gGCuguGGUggagCGGcCGCuGUUGACGGCGGc- -3'
miRNA:   3'- -UGu--CCAa---GCC-GUG-CAACUGCCGCUug -5'
11001 5' -54.1 NC_002794.1 + 18698 0.66 0.977352
Target:  5'- ------cCGGCACGgcGGCGGCGGu- -3'
miRNA:   3'- uguccaaGCCGUGCaaCUGCCGCUug -5'
11001 5' -54.1 NC_002794.1 + 21887 0.7 0.849653
Target:  5'- cGCGGGguguccgCGGCcuGCGUcgguggUGGCGGCGGAg -3'
miRNA:   3'- -UGUCCaa-----GCCG--UGCA------ACUGCCGCUUg -5'
11001 5' -54.1 NC_002794.1 + 32872 0.68 0.933885
Target:  5'- gGCGGG--CGGCgGCGgcGGCGGCGGc- -3'
miRNA:   3'- -UGUCCaaGCCG-UGCaaCUGCCGCUug -5'
11001 5' -54.1 NC_002794.1 + 47780 0.69 0.912087
Target:  5'- cGCAGGUcgagCGGCcgcaguacACGgucuCGGCGAACa -3'
miRNA:   3'- -UGUCCAa---GCCG--------UGCaacuGCCGCUUG- -5'
11001 5' -54.1 NC_002794.1 + 48937 0.7 0.856677
Target:  5'- cCAGGcgcUCGGCGaccucuuCGcaGACGGCGAGCa -3'
miRNA:   3'- uGUCCa--AGCCGU-------GCaaCUGCCGCUUG- -5'
11001 5' -54.1 NC_002794.1 + 53255 0.66 0.977352
Target:  5'- cGCcGGcgUCGccGCGCGacaacggGGCGGCGAGCg -3'
miRNA:   3'- -UGuCCa-AGC--CGUGCaa-----CUGCCGCUUG- -5'
11001 5' -54.1 NC_002794.1 + 55274 0.67 0.947753
Target:  5'- -gGGGggCGGCGg--UGGCGGCGAc- -3'
miRNA:   3'- ugUCCaaGCCGUgcaACUGCCGCUug -5'
11001 5' -54.1 NC_002794.1 + 55296 0.67 0.959547
Target:  5'- -gAGGgcggCGGCgGCGUc-GCGGCGGGCg -3'
miRNA:   3'- ugUCCaa--GCCG-UGCAacUGCCGCUUG- -5'
11001 5' -54.1 NC_002794.1 + 55813 0.69 0.893273
Target:  5'- cCGGGcgCgGGCGCGcgcUGAUGGCGAAg -3'
miRNA:   3'- uGUCCaaG-CCGUGCa--ACUGCCGCUUg -5'
11001 5' -54.1 NC_002794.1 + 68475 0.68 0.923459
Target:  5'- cGCA-GUggGGCACGgaGGCGGcCGAGCc -3'
miRNA:   3'- -UGUcCAagCCGUGCaaCUGCC-GCUUG- -5'
11001 5' -54.1 NC_002794.1 + 71220 0.66 0.974883
Target:  5'- -aAGGUccCGGcCGCGUagUGGCGGCcGGCg -3'
miRNA:   3'- ugUCCAa-GCC-GUGCA--ACUGCCGcUUG- -5'
11001 5' -54.1 NC_002794.1 + 71296 0.71 0.799033
Target:  5'- aAUAGccgcCGGCGCGcucgGGCGGCGAGCg -3'
miRNA:   3'- -UGUCcaa-GCCGUGCaa--CUGCCGCUUG- -5'
11001 5' -54.1 NC_002794.1 + 79428 0.67 0.947753
Target:  5'- -aAGGgccCGGCgGCGgcGGCGGCGAccgGCg -3'
miRNA:   3'- ugUCCaa-GCCG-UGCaaCUGCCGCU---UG- -5'
11001 5' -54.1 NC_002794.1 + 82118 0.66 0.974883
Target:  5'- cGCAGccuccUCGGCguggGCGUcacGugGGCGGACa -3'
miRNA:   3'- -UGUCca---AGCCG----UGCAa--CugCCGCUUG- -5'
11001 5' -54.1 NC_002794.1 + 86930 0.68 0.938742
Target:  5'- gGCGGGcaggCGGgGCGggaucCGGCGAGCg -3'
miRNA:   3'- -UGUCCaa--GCCgUGCaacu-GCCGCUUG- -5'
11001 5' -54.1 NC_002794.1 + 87339 0.74 0.673495
Target:  5'- gGCAGGUUCcccaGCAgCGgguccGGCGGCGAGCg -3'
miRNA:   3'- -UGUCCAAGc---CGU-GCaa---CUGCCGCUUG- -5'
11001 5' -54.1 NC_002794.1 + 90833 0.67 0.963032
Target:  5'- uCAG--UCGGUACGagGGCGGCGuGCu -3'
miRNA:   3'- uGUCcaAGCCGUGCaaCUGCCGCuUG- -5'
11001 5' -54.1 NC_002794.1 + 91209 0.67 0.955841
Target:  5'- cGCGGa--CGGCgACGc-GACGGCGGACg -3'
miRNA:   3'- -UGUCcaaGCCG-UGCaaCUGCCGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.