miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11002 3' -52.2 NC_002794.1 + 101042 0.66 0.993394
Target:  5'- cGCGGGUCGGccgcUACuGCGUGCA-GGACg -3'
miRNA:   3'- -UGUCCAGCUuc--AUG-UGCGCGUgCUUG- -5'
11002 3' -52.2 NC_002794.1 + 80750 0.66 0.993394
Target:  5'- -gGGGUCc-GGgcCACGCGCuCGGACc -3'
miRNA:   3'- ugUCCAGcuUCauGUGCGCGuGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 41934 0.66 0.993394
Target:  5'- cCAGccCGAAGUGCACGCccucggcguGCGCGGc- -3'
miRNA:   3'- uGUCcaGCUUCAUGUGCG---------CGUGCUug -5'
11002 3' -52.2 NC_002794.1 + 113460 0.66 0.99311
Target:  5'- aGCAGGUCGGuguaGGUcguguccaggcucuGCAggagcuCGCGCGCGGc- -3'
miRNA:   3'- -UGUCCAGCU----UCA--------------UGU------GCGCGUGCUug -5'
11002 3' -52.2 NC_002794.1 + 130148 0.66 0.992409
Target:  5'- cGCGGcG-CGAgcgcGGgauCACGCGCGCGAGa -3'
miRNA:   3'- -UGUC-CaGCU----UCau-GUGCGCGUGCUUg -5'
11002 3' -52.2 NC_002794.1 + 183597 0.66 0.992409
Target:  5'- -gGGGgCGGAGggggGC-CGCGCGCGGccgGCg -3'
miRNA:   3'- ugUCCaGCUUCa---UGuGCGCGUGCU---UG- -5'
11002 3' -52.2 NC_002794.1 + 99543 0.66 0.992409
Target:  5'- uGCGGGccgCGGAaaccGCGCGCGCccuccGCGGGCg -3'
miRNA:   3'- -UGUCCa--GCUUca--UGUGCGCG-----UGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 157387 0.66 0.992409
Target:  5'- --cGGUCGGAuGUacguguacgucuGCACGC-CACGGACc -3'
miRNA:   3'- uguCCAGCUU-CA------------UGUGCGcGUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 63502 0.66 0.992409
Target:  5'- cGCGGcGUCGucGUcCGCGacgccuccCGCGCGAGCc -3'
miRNA:   3'- -UGUC-CAGCuuCAuGUGC--------GCGUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 9127 0.66 0.99131
Target:  5'- cCGGG-CGAcGaacCGCGCGCGCGAGa -3'
miRNA:   3'- uGUCCaGCUuCau-GUGCGCGUGCUUg -5'
11002 3' -52.2 NC_002794.1 + 82610 0.66 0.99131
Target:  5'- --cGGcCGAAGU-CACGgaacUGCGCGAACu -3'
miRNA:   3'- uguCCaGCUUCAuGUGC----GCGUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 43023 0.66 0.990089
Target:  5'- cGCAGGUCGucGgccuccauCGCGCgGCAggcCGAGCc -3'
miRNA:   3'- -UGUCCAGCuuCau------GUGCG-CGU---GCUUG- -5'
11002 3' -52.2 NC_002794.1 + 8923 0.66 0.990089
Target:  5'- aGCAGGUgGccGUGCGCaccUGCACGAu- -3'
miRNA:   3'- -UGUCCAgCuuCAUGUGc--GCGUGCUug -5'
11002 3' -52.2 NC_002794.1 + 84020 0.66 0.990089
Target:  5'- gACGGGcaCGAGcgACGCGagcgGCACGAACg -3'
miRNA:   3'- -UGUCCa-GCUUcaUGUGCg---CGUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 56282 0.66 0.990089
Target:  5'- aGCAGG-CGGcagAGcacgAUGCGCGCGCGGucGCg -3'
miRNA:   3'- -UGUCCaGCU---UCa---UGUGCGCGUGCU--UG- -5'
11002 3' -52.2 NC_002794.1 + 59207 0.66 0.990089
Target:  5'- cGCAcGUCGgcGUcucggcCGCgGCGCGCGAGCu -3'
miRNA:   3'- -UGUcCAGCuuCAu-----GUG-CGCGUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 185102 0.66 0.988738
Target:  5'- aGCcGGUCGuguuGUacaGCAUGUGCACGAc- -3'
miRNA:   3'- -UGuCCAGCuu--CA---UGUGCGCGUGCUug -5'
11002 3' -52.2 NC_002794.1 + 188482 0.66 0.988738
Target:  5'- --cGGUCGGcacaaccaacGGUACugGCGCuCGAc- -3'
miRNA:   3'- uguCCAGCU----------UCAUGugCGCGuGCUug -5'
11002 3' -52.2 NC_002794.1 + 133997 0.66 0.988738
Target:  5'- -gAGGUCGGucgccgGGUGCgaGCGCuGCACGGu- -3'
miRNA:   3'- ugUCCAGCU------UCAUG--UGCG-CGUGCUug -5'
11002 3' -52.2 NC_002794.1 + 34227 0.66 0.988306
Target:  5'- cGCaAGGUgcaGGAGcUGCACGCGCggcugccgccgcagGCGGACc -3'
miRNA:   3'- -UG-UCCAg--CUUC-AUGUGCGCG--------------UGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.