miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11002 3' -52.2 NC_002794.1 + 111156 0.8 0.474865
Target:  5'- aGCGGGUCaGGcagacgcGGUGCaggGCGCGCACGAACu -3'
miRNA:   3'- -UGUCCAG-CU-------UCAUG---UGCGCGUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 47780 0.76 0.657302
Target:  5'- cGCAGGUCGAgcggccgcAGUACACG-GUcucgGCGAACa -3'
miRNA:   3'- -UGUCCAGCU--------UCAUGUGCgCG----UGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 100767 0.75 0.708402
Target:  5'- gGCcGGUCGcgGAGUACACGCGCcuGCGGuucGCg -3'
miRNA:   3'- -UGuCCAGC--UUCAUGUGCGCG--UGCU---UG- -5'
11002 3' -52.2 NC_002794.1 + 117231 0.75 0.708402
Target:  5'- uCAGGgCGAccgACGCGUGCACGAACu -3'
miRNA:   3'- uGUCCaGCUucaUGUGCGCGUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 112513 0.75 0.738345
Target:  5'- --cGGUCGcGGUGCugGCGCAgGAGg -3'
miRNA:   3'- uguCCAGCuUCAUGugCGCGUgCUUg -5'
11002 3' -52.2 NC_002794.1 + 103649 0.74 0.776904
Target:  5'- gACAGGUCGAGGcAgGCGUGCcgguGCGAGu -3'
miRNA:   3'- -UGUCCAGCUUCaUgUGCGCG----UGCUUg -5'
11002 3' -52.2 NC_002794.1 + 44133 0.73 0.805366
Target:  5'- gGCAGuGUagggcccgcucgagaGAAGUGCACGUGCACGGcGCg -3'
miRNA:   3'- -UGUC-CAg--------------CUUCAUGUGCGCGUGCU-UG- -5'
11002 3' -52.2 NC_002794.1 + 144816 0.73 0.813353
Target:  5'- cCGGG-CGuccGUGCACGCGgACGAGCc -3'
miRNA:   3'- uGUCCaGCuu-CAUGUGCGCgUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 87262 0.73 0.822068
Target:  5'- gGCGGGUgGggGUGCAgGcCGgGCGggUg -3'
miRNA:   3'- -UGUCCAgCuuCAUGUgC-GCgUGCuuG- -5'
11002 3' -52.2 NC_002794.1 + 87178 0.73 0.822068
Target:  5'- gGCGGGUgGggGUGCAgGcCGgGCGggUg -3'
miRNA:   3'- -UGUCCAgCuuCAUGUgC-GCgUGCuuG- -5'
11002 3' -52.2 NC_002794.1 + 87220 0.73 0.822068
Target:  5'- gGCGGGUgGggGUGCAgGcCGgGCGggUg -3'
miRNA:   3'- -UGUCCAgCuuCAUGUgC-GCgUGCuuG- -5'
11002 3' -52.2 NC_002794.1 + 87094 0.73 0.822068
Target:  5'- gGCGGGUgGggGUGCAgGcCGgGCGggUg -3'
miRNA:   3'- -UGUCCAgCuuCAUGUgC-GCgUGCuuG- -5'
11002 3' -52.2 NC_002794.1 + 87136 0.73 0.822068
Target:  5'- gGCGGGUgGggGUGCAgGcCGgGCGggUg -3'
miRNA:   3'- -UGUCCAgCuuCAUGUgC-GCgUGCuuG- -5'
11002 3' -52.2 NC_002794.1 + 106111 0.72 0.838962
Target:  5'- aGCGGGUCGAuugcGaGCAUGCGCACa--- -3'
miRNA:   3'- -UGUCCAGCUu---CaUGUGCGCGUGcuug -5'
11002 3' -52.2 NC_002794.1 + 116388 0.72 0.847125
Target:  5'- uGCGGGUCGAAG-ACgaaggugugGCgGgGCGCGAGCa -3'
miRNA:   3'- -UGUCCAGCUUCaUG---------UG-CgCGUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 71571 0.72 0.850335
Target:  5'- -uGGG-CGAuccGGUACACGCGCuuccacugcggcuggGCGAACa -3'
miRNA:   3'- ugUCCaGCU---UCAUGUGCGCG---------------UGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 69510 0.72 0.855089
Target:  5'- cGCAcGGUC-AGGUacgGCGCGUGCACGAGa -3'
miRNA:   3'- -UGU-CCAGcUUCA---UGUGCGCGUGCUUg -5'
11002 3' -52.2 NC_002794.1 + 92426 0.72 0.858217
Target:  5'- cACGGG-CGAGG-ACACGCuggccgugcggggccGCGCGGACu -3'
miRNA:   3'- -UGUCCaGCUUCaUGUGCG---------------CGUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 183683 0.72 0.870394
Target:  5'- gACGGGUCGAGcgcccGC-CGCGCGCGGcgGCa -3'
miRNA:   3'- -UGUCCAGCUUca---UGuGCGCGUGCU--UG- -5'
11002 3' -52.2 NC_002794.1 + 25116 0.72 0.877722
Target:  5'- gACcGGUCGAgaucgagcggGGcACGCGCGCACGGu- -3'
miRNA:   3'- -UGuCCAGCU----------UCaUGUGCGCGUGCUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.