miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11002 3' -52.2 NC_002794.1 + 135622 0.67 0.987248
Target:  5'- --cGGUCGcAGGUugACGUcgGCGAACa -3'
miRNA:   3'- uguCCAGC-UUCAugUGCGcgUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 84528 0.67 0.987248
Target:  5'- -----aCGAGcuGUaacGCACGCGCACGGACa -3'
miRNA:   3'- uguccaGCUU--CA---UGUGCGCGUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 65115 0.67 0.987248
Target:  5'- --uGGUcCGAGGU-CGCGCGCcugucCGAGCu -3'
miRNA:   3'- uguCCA-GCUUCAuGUGCGCGu----GCUUG- -5'
11002 3' -52.2 NC_002794.1 + 142813 0.67 0.987248
Target:  5'- cCGGGUCGGccucGUucaACGCGUGCGCGuuCa -3'
miRNA:   3'- uGUCCAGCUu---CA---UGUGCGCGUGCuuG- -5'
11002 3' -52.2 NC_002794.1 + 129868 0.67 0.98561
Target:  5'- aACGGGgggcgcacgaGAAGUGgACGCGggagaGCGAACg -3'
miRNA:   3'- -UGUCCag--------CUUCAUgUGCGCg----UGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 17464 0.67 0.98561
Target:  5'- -gAGGUCGAAGguucgcuccACACGC-CGCGuuuGCg -3'
miRNA:   3'- ugUCCAGCUUCa--------UGUGCGcGUGCu--UG- -5'
11002 3' -52.2 NC_002794.1 + 184813 0.67 0.98561
Target:  5'- aGCAGcGUCacGGgGCACGCGUcCGGGCg -3'
miRNA:   3'- -UGUC-CAGcuUCaUGUGCGCGuGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 195109 0.67 0.985438
Target:  5'- uACGGcGUCuc-GUGCgcccgcgGCGCGCGCGGGCu -3'
miRNA:   3'- -UGUC-CAGcuuCAUG-------UGCGCGUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 119957 0.67 0.983816
Target:  5'- aGCAGGUCGAGcGUGcuCugGUGguucgACGAGCg -3'
miRNA:   3'- -UGUCCAGCUU-CAU--GugCGCg----UGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 101009 0.67 0.983816
Target:  5'- cGCGGGccuuccugUCGggGgACGCGgGC-CGGGCg -3'
miRNA:   3'- -UGUCC--------AGCuuCaUGUGCgCGuGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 182297 0.67 0.983816
Target:  5'- gGCGGGUgGAcGGgcagACGgGCGgACGGGCg -3'
miRNA:   3'- -UGUCCAgCU-UCa---UGUgCGCgUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 190353 0.67 0.981858
Target:  5'- uCAGGUCGucGgccGCGCGgCGCAgCGggUg -3'
miRNA:   3'- uGUCCAGCuuCa--UGUGC-GCGU-GCuuG- -5'
11002 3' -52.2 NC_002794.1 + 120244 0.67 0.981858
Target:  5'- cCAGGcCGu-GUACACGCGCuucuuCGuGCa -3'
miRNA:   3'- uGUCCaGCuuCAUGUGCGCGu----GCuUG- -5'
11002 3' -52.2 NC_002794.1 + 136738 0.67 0.979727
Target:  5'- gGC-GGUCGAGGUucgucuccccgaGCugGCGgACGcGCg -3'
miRNA:   3'- -UGuCCAGCUUCA------------UGugCGCgUGCuUG- -5'
11002 3' -52.2 NC_002794.1 + 118282 0.67 0.979727
Target:  5'- cCGGcGUCGggG-AC-CGCGC-CGGGCg -3'
miRNA:   3'- uGUC-CAGCuuCaUGuGCGCGuGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 99786 0.68 0.977416
Target:  5'- cCGGcGUCGAcuacGaGCGCGCGcCGCGGGCg -3'
miRNA:   3'- uGUC-CAGCUu---CaUGUGCGC-GUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 139430 0.68 0.977416
Target:  5'- uGCAGGUCucguGUccGCGCGCGC-CGAu- -3'
miRNA:   3'- -UGUCCAGcuu-CA--UGUGCGCGuGCUug -5'
11002 3' -52.2 NC_002794.1 + 112912 0.68 0.974916
Target:  5'- cCAGGUCcAGGUGCuCGgGCuucuCGAGCu -3'
miRNA:   3'- uGUCCAGcUUCAUGuGCgCGu---GCUUG- -5'
11002 3' -52.2 NC_002794.1 + 186648 0.68 0.974916
Target:  5'- cGCGGGUCGGc---CGCGCGCACc--- -3'
miRNA:   3'- -UGUCCAGCUucauGUGCGCGUGcuug -5'
11002 3' -52.2 NC_002794.1 + 105069 0.68 0.974916
Target:  5'- -gGGGUCGccGUcCAgGUGCGCGAAa -3'
miRNA:   3'- ugUCCAGCuuCAuGUgCGCGUGCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.