miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11002 3' -52.2 NC_002794.1 + 106332 0.68 0.97222
Target:  5'- gACGGGUCGAcGGUuCGCcgggucgacgGCGgGCGGGCg -3'
miRNA:   3'- -UGUCCAGCU-UCAuGUG----------CGCgUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 55955 0.68 0.97222
Target:  5'- aGCAGGaacggguaguagUCGAGGUggauggcguaGC-CGCGgGCGAGCa -3'
miRNA:   3'- -UGUCC------------AGCUUCA----------UGuGCGCgUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 143315 0.68 0.969321
Target:  5'- gGCGGGaUgGAAGUcgguCGCGUGCuCGGGCa -3'
miRNA:   3'- -UGUCC-AgCUUCAu---GUGCGCGuGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 49519 0.68 0.966213
Target:  5'- cCGGGUacauGGGUuCGCGCGCcGCGAGCa -3'
miRNA:   3'- uGUCCAgc--UUCAuGUGCGCG-UGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 113148 0.68 0.966213
Target:  5'- gGCGGGcgCGucagcguGUA-GCGCGCGCGGGCg -3'
miRNA:   3'- -UGUCCa-GCuu-----CAUgUGCGCGUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 184056 0.68 0.966213
Target:  5'- cGCGGGccgcggCGAAGcgGCACGCGCccACGGu- -3'
miRNA:   3'- -UGUCCa-----GCUUCa-UGUGCGCG--UGCUug -5'
11002 3' -52.2 NC_002794.1 + 136380 0.68 0.964244
Target:  5'- -gAGGUCGuugagcaccggcuccGGGUcGCGCGUGCGCuGAACg -3'
miRNA:   3'- ugUCCAGC---------------UUCA-UGUGCGCGUG-CUUG- -5'
11002 3' -52.2 NC_002794.1 + 142602 0.68 0.962889
Target:  5'- -gGGGaUGAcGaGCugGCGCACGGGCg -3'
miRNA:   3'- ugUCCaGCUuCaUGugCGCGUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 34847 0.69 0.959344
Target:  5'- aGCGGGcgUCGGAGcGgGCGC-CGCGGGCg -3'
miRNA:   3'- -UGUCC--AGCUUCaUgUGCGcGUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 195061 0.69 0.955572
Target:  5'- gACAGGUCGAAGaugaACACGCGgAaacCGuGCc -3'
miRNA:   3'- -UGUCCAGCUUCa---UGUGCGCgU---GCuUG- -5'
11002 3' -52.2 NC_002794.1 + 145229 0.69 0.951571
Target:  5'- -uGGuGUCGGAGgcGCGCGCGCuGCGGAa -3'
miRNA:   3'- ugUC-CAGCUUCa-UGUGCGCG-UGCUUg -5'
11002 3' -52.2 NC_002794.1 + 33224 0.69 0.94286
Target:  5'- gGCAGGUCucggacGAGUGgaACGCGCACGccAGCc -3'
miRNA:   3'- -UGUCCAGc-----UUCAUg-UGCGCGUGC--UUG- -5'
11002 3' -52.2 NC_002794.1 + 104630 0.7 0.938146
Target:  5'- aGCAGcUCGuuGU-CGCGCGC-CGAGCa -3'
miRNA:   3'- -UGUCcAGCuuCAuGUGCGCGuGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 139459 0.7 0.935201
Target:  5'- gGCAGGUCGucGUGCGCcaggacggugguguaGauggGCGCGGGCg -3'
miRNA:   3'- -UGUCCAGCuuCAUGUG---------------Cg---CGUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 142260 0.7 0.933189
Target:  5'- gACGGGaUCGAcgagaucGUGCA-GCGCAUGAGCc -3'
miRNA:   3'- -UGUCC-AGCUu------CAUGUgCGCGUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 122974 0.7 0.92799
Target:  5'- -gGGGUgGcuGUACGCGCGCcugguGCGGGCc -3'
miRNA:   3'- ugUCCAgCuuCAUGUGCGCG-----UGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 112764 0.7 0.92799
Target:  5'- -gGGGUCGggGUgaggucucggaGgACGUcccGCACGAACg -3'
miRNA:   3'- ugUCCAGCuuCA-----------UgUGCG---CGUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 77137 0.7 0.922546
Target:  5'- aGCuGGcCGAAG-ACGCGgaGCGCGAACc -3'
miRNA:   3'- -UGuCCaGCUUCaUGUGCg-CGUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 97060 0.7 0.922546
Target:  5'- cGCAGGguaCGGAcaucGUGCGCuuCGCGCGGACg -3'
miRNA:   3'- -UGUCCa--GCUU----CAUGUGc-GCGUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 70291 0.7 0.916859
Target:  5'- aGCAGGcCGggGggGCcCGgGCGCGAAg -3'
miRNA:   3'- -UGUCCaGCuuCa-UGuGCgCGUGCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.