miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11002 3' -52.2 NC_002794.1 + 70291 0.7 0.916859
Target:  5'- aGCAGGcCGggGggGCcCGgGCGCGAAg -3'
miRNA:   3'- -UGUCCaGCuuCa-UGuGCgCGUGCUUg -5'
11002 3' -52.2 NC_002794.1 + 71571 0.72 0.850335
Target:  5'- -uGGG-CGAuccGGUACACGCGCuuccacugcggcuggGCGAACa -3'
miRNA:   3'- ugUCCaGCU---UCAUGUGCGCG---------------UGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 77137 0.7 0.922546
Target:  5'- aGCuGGcCGAAG-ACGCGgaGCGCGAACc -3'
miRNA:   3'- -UGuCCaGCUUCaUGUGCg-CGUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 80750 0.66 0.993394
Target:  5'- -gGGGUCc-GGgcCACGCGCuCGGACc -3'
miRNA:   3'- ugUCCAGcuUCauGUGCGCGuGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 82610 0.66 0.99131
Target:  5'- --cGGcCGAAGU-CACGgaacUGCGCGAACu -3'
miRNA:   3'- uguCCaGCUUCAuGUGC----GCGUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 84020 0.66 0.990089
Target:  5'- gACGGGcaCGAGcgACGCGagcgGCACGAACg -3'
miRNA:   3'- -UGUCCa-GCUUcaUGUGCg---CGUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 84528 0.67 0.987248
Target:  5'- -----aCGAGcuGUaacGCACGCGCACGGACa -3'
miRNA:   3'- uguccaGCUU--CA---UGUGCGCGUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 87094 0.73 0.822068
Target:  5'- gGCGGGUgGggGUGCAgGcCGgGCGggUg -3'
miRNA:   3'- -UGUCCAgCuuCAUGUgC-GCgUGCuuG- -5'
11002 3' -52.2 NC_002794.1 + 87136 0.73 0.822068
Target:  5'- gGCGGGUgGggGUGCAgGcCGgGCGggUg -3'
miRNA:   3'- -UGUCCAgCuuCAUGUgC-GCgUGCuuG- -5'
11002 3' -52.2 NC_002794.1 + 87178 0.73 0.822068
Target:  5'- gGCGGGUgGggGUGCAgGcCGgGCGggUg -3'
miRNA:   3'- -UGUCCAgCuuCAUGUgC-GCgUGCuuG- -5'
11002 3' -52.2 NC_002794.1 + 87220 0.73 0.822068
Target:  5'- gGCGGGUgGggGUGCAgGcCGgGCGggUg -3'
miRNA:   3'- -UGUCCAgCuuCAUGUgC-GCgUGCuuG- -5'
11002 3' -52.2 NC_002794.1 + 87262 0.73 0.822068
Target:  5'- gGCGGGUgGggGUGCAgGcCGgGCGggUg -3'
miRNA:   3'- -UGUCCAgCuuCAUGUgC-GCgUGCuuG- -5'
11002 3' -52.2 NC_002794.1 + 92426 0.72 0.858217
Target:  5'- cACGGG-CGAGG-ACACGCuggccgugcggggccGCGCGGACu -3'
miRNA:   3'- -UGUCCaGCUUCaUGUGCG---------------CGUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 97060 0.7 0.922546
Target:  5'- cGCAGGguaCGGAcaucGUGCGCuuCGCGCGGACg -3'
miRNA:   3'- -UGUCCa--GCUU----CAUGUGc-GCGUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 99543 0.66 0.992409
Target:  5'- uGCGGGccgCGGAaaccGCGCGCGCccuccGCGGGCg -3'
miRNA:   3'- -UGUCCa--GCUUca--UGUGCGCG-----UGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 99786 0.68 0.977416
Target:  5'- cCGGcGUCGAcuacGaGCGCGCGcCGCGGGCg -3'
miRNA:   3'- uGUC-CAGCUu---CaUGUGCGC-GUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 100767 0.75 0.708402
Target:  5'- gGCcGGUCGcgGAGUACACGCGCcuGCGGuucGCg -3'
miRNA:   3'- -UGuCCAGC--UUCAUGUGCGCG--UGCU---UG- -5'
11002 3' -52.2 NC_002794.1 + 101009 0.67 0.983816
Target:  5'- cGCGGGccuuccugUCGggGgACGCGgGC-CGGGCg -3'
miRNA:   3'- -UGUCC--------AGCuuCaUGUGCgCGuGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 101042 0.66 0.993394
Target:  5'- cGCGGGUCGGccgcUACuGCGUGCA-GGACg -3'
miRNA:   3'- -UGUCCAGCUuc--AUG-UGCGCGUgCUUG- -5'
11002 3' -52.2 NC_002794.1 + 103349 0.71 0.91093
Target:  5'- uCGGGcuccucgaagaCGAGGUGCAUGUGCACGAu- -3'
miRNA:   3'- uGUCCa----------GCUUCAUGUGCGCGUGCUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.