miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11002 3' -52.2 NC_002794.1 + 195109 0.67 0.985438
Target:  5'- uACGGcGUCuc-GUGCgcccgcgGCGCGCGCGGGCu -3'
miRNA:   3'- -UGUC-CAGcuuCAUG-------UGCGCGUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 195061 0.69 0.955572
Target:  5'- gACAGGUCGAAGaugaACACGCGgAaacCGuGCc -3'
miRNA:   3'- -UGUCCAGCUUCa---UGUGCGCgU---GCuUG- -5'
11002 3' -52.2 NC_002794.1 + 190353 0.67 0.981858
Target:  5'- uCAGGUCGucGgccGCGCGgCGCAgCGggUg -3'
miRNA:   3'- uGUCCAGCuuCa--UGUGC-GCGU-GCuuG- -5'
11002 3' -52.2 NC_002794.1 + 188482 0.66 0.988738
Target:  5'- --cGGUCGGcacaaccaacGGUACugGCGCuCGAc- -3'
miRNA:   3'- uguCCAGCU----------UCAUGugCGCGuGCUug -5'
11002 3' -52.2 NC_002794.1 + 186648 0.68 0.974916
Target:  5'- cGCGGGUCGGc---CGCGCGCACc--- -3'
miRNA:   3'- -UGUCCAGCUucauGUGCGCGUGcuug -5'
11002 3' -52.2 NC_002794.1 + 185102 0.66 0.988738
Target:  5'- aGCcGGUCGuguuGUacaGCAUGUGCACGAc- -3'
miRNA:   3'- -UGuCCAGCuu--CA---UGUGCGCGUGCUug -5'
11002 3' -52.2 NC_002794.1 + 184813 0.67 0.98561
Target:  5'- aGCAGcGUCacGGgGCACGCGUcCGGGCg -3'
miRNA:   3'- -UGUC-CAGcuUCaUGUGCGCGuGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 184056 0.68 0.966213
Target:  5'- cGCGGGccgcggCGAAGcgGCACGCGCccACGGu- -3'
miRNA:   3'- -UGUCCa-----GCUUCa-UGUGCGCG--UGCUug -5'
11002 3' -52.2 NC_002794.1 + 183683 0.72 0.870394
Target:  5'- gACGGGUCGAGcgcccGC-CGCGCGCGGcgGCa -3'
miRNA:   3'- -UGUCCAGCUUca---UGuGCGCGUGCU--UG- -5'
11002 3' -52.2 NC_002794.1 + 183597 0.66 0.992409
Target:  5'- -gGGGgCGGAGggggGC-CGCGCGCGGccgGCg -3'
miRNA:   3'- ugUCCaGCUUCa---UGuGCGCGUGCU---UG- -5'
11002 3' -52.2 NC_002794.1 + 182297 0.67 0.983816
Target:  5'- gGCGGGUgGAcGGgcagACGgGCGgACGGGCg -3'
miRNA:   3'- -UGUCCAgCU-UCa---UGUgCGCgUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 157387 0.66 0.992409
Target:  5'- --cGGUCGGAuGUacguguacgucuGCACGC-CACGGACc -3'
miRNA:   3'- uguCCAGCUU-CA------------UGUGCGcGUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 145229 0.69 0.951571
Target:  5'- -uGGuGUCGGAGgcGCGCGCGCuGCGGAa -3'
miRNA:   3'- ugUC-CAGCUUCa-UGUGCGCG-UGCUUg -5'
11002 3' -52.2 NC_002794.1 + 144816 0.73 0.813353
Target:  5'- cCGGG-CGuccGUGCACGCGgACGAGCc -3'
miRNA:   3'- uGUCCaGCuu-CAUGUGCGCgUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 143800 0.71 0.904759
Target:  5'- cCAGGUCGc-GUACACGcCGUcgguucccaugGCGAGCg -3'
miRNA:   3'- uGUCCAGCuuCAUGUGC-GCG-----------UGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 143315 0.68 0.969321
Target:  5'- gGCGGGaUgGAAGUcgguCGCGUGCuCGGGCa -3'
miRNA:   3'- -UGUCC-AgCUUCAu---GUGCGCGuGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 142813 0.67 0.987248
Target:  5'- cCGGGUCGGccucGUucaACGCGUGCGCGuuCa -3'
miRNA:   3'- uGUCCAGCUu---CA---UGUGCGCGUGCuuG- -5'
11002 3' -52.2 NC_002794.1 + 142602 0.68 0.962889
Target:  5'- -gGGGaUGAcGaGCugGCGCACGGGCg -3'
miRNA:   3'- ugUCCaGCUuCaUGugCGCGUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 142260 0.7 0.933189
Target:  5'- gACGGGaUCGAcgagaucGUGCA-GCGCAUGAGCc -3'
miRNA:   3'- -UGUCC-AGCUu------CAUGUgCGCGUGCUUG- -5'
11002 3' -52.2 NC_002794.1 + 139459 0.7 0.935201
Target:  5'- gGCAGGUCGucGUGCGCcaggacggugguguaGauggGCGCGGGCg -3'
miRNA:   3'- -UGUCCAGCuuCAUGUG---------------Cg---CGUGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.