miRNA display CGI


Results 1 - 20 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11002 5' -63.3 NC_002794.1 + 109397 0.66 0.6999
Target:  5'- aUGCUGGCgaucGCGcgacGCCGGCccguguacguGCAcugagggaccGCCGGGg -3'
miRNA:   3'- cGCGACCG----CGC----UGGCCG----------UGU----------CGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 124538 0.66 0.6999
Target:  5'- aCGCUGGCGCug-CGGCugAaGCCGu- -3'
miRNA:   3'- cGCGACCGCGcugGCCGugU-CGGCcc -5'
11002 5' -63.3 NC_002794.1 + 146974 0.66 0.6999
Target:  5'- cGC-CUGuCGCGAggUCGGCGCcGCCGGc -3'
miRNA:   3'- -CGcGACcGCGCU--GGCCGUGuCGGCCc -5'
11002 5' -63.3 NC_002794.1 + 3747 0.66 0.6999
Target:  5'- cCGCaacGCGCGuCaCGGCGgGGCgGGGg -3'
miRNA:   3'- cGCGac-CGCGCuG-GCCGUgUCGgCCC- -5'
11002 5' -63.3 NC_002794.1 + 153684 0.66 0.6999
Target:  5'- -gGCUcgacGCGCGACCGGCGa--CCGGu -3'
miRNA:   3'- cgCGAc---CGCGCUGGCCGUgucGGCCc -5'
11002 5' -63.3 NC_002794.1 + 122932 0.66 0.6999
Target:  5'- cGUGCagaaGGaGCGgaACCGGUGCGGCUGGa -3'
miRNA:   3'- -CGCGa---CCgCGC--UGGCCGUGUCGGCCc -5'
11002 5' -63.3 NC_002794.1 + 37272 0.66 0.691477
Target:  5'- -gGCgGGCGCG-CgGGCGCGGCguacaacgacacguaGGGg -3'
miRNA:   3'- cgCGaCCGCGCuGgCCGUGUCGg--------------CCC- -5'
11002 5' -63.3 NC_002794.1 + 20394 0.66 0.690539
Target:  5'- gGUGC-GGCGgGACCGGg--AGCgGGGc -3'
miRNA:   3'- -CGCGaCCGCgCUGGCCgugUCGgCCC- -5'
11002 5' -63.3 NC_002794.1 + 98266 0.66 0.690539
Target:  5'- gGC-CUGGUGUcucGAacaaCGGCGCA-CCGGGg -3'
miRNA:   3'- -CGcGACCGCG---CUg---GCCGUGUcGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 37763 0.66 0.690539
Target:  5'- gGCGCcGGCGgGAgCGGCcgucgucguCGGCCGcaGGc -3'
miRNA:   3'- -CGCGaCCGCgCUgGCCGu--------GUCGGC--CC- -5'
11002 5' -63.3 NC_002794.1 + 99927 0.66 0.690539
Target:  5'- cGUGC-GGCGUGGucuugCGGCuguuCGGCCGGa -3'
miRNA:   3'- -CGCGaCCGCGCUg----GCCGu---GUCGGCCc -5'
11002 5' -63.3 NC_002794.1 + 118664 0.66 0.690539
Target:  5'- cCGUgGGCGCGACgcccgCGGcCGCcGCCGGcGg -3'
miRNA:   3'- cGCGaCCGCGCUG-----GCC-GUGuCGGCC-C- -5'
11002 5' -63.3 NC_002794.1 + 42643 0.66 0.681137
Target:  5'- aGCGgaGuCGCGGCCgaagccgacGGCGCcGCCGGc -3'
miRNA:   3'- -CGCgaCcGCGCUGG---------CCGUGuCGGCCc -5'
11002 5' -63.3 NC_002794.1 + 102504 0.66 0.681137
Target:  5'- cUGUU-GCaGCGGCUGGCGCGcGCgCGGGa -3'
miRNA:   3'- cGCGAcCG-CGCUGGCCGUGU-CG-GCCC- -5'
11002 5' -63.3 NC_002794.1 + 105938 0.66 0.681137
Target:  5'- cGgGCUGGaCGCG-CUGuacgaACGGCUGGGg -3'
miRNA:   3'- -CgCGACC-GCGCuGGCcg---UGUCGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 127353 0.66 0.681137
Target:  5'- aCGCUcGCgGCGG-CGGCGCGGCCGc- -3'
miRNA:   3'- cGCGAcCG-CGCUgGCCGUGUCGGCcc -5'
11002 5' -63.3 NC_002794.1 + 37893 0.66 0.681137
Target:  5'- gGCGgUGGCgGCGGCagCGGCuc-GCCGGc -3'
miRNA:   3'- -CGCgACCG-CGCUG--GCCGuguCGGCCc -5'
11002 5' -63.3 NC_002794.1 + 41207 0.66 0.681137
Target:  5'- gGCGCUGcUGCcACCGGC-Cu-CCGGGg -3'
miRNA:   3'- -CGCGACcGCGcUGGCCGuGucGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 142785 0.66 0.681137
Target:  5'- uCGUacGGCGCGugCaGCcgcaguuCGGCCGGGu -3'
miRNA:   3'- cGCGa-CCGCGCugGcCGu------GUCGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 16353 0.66 0.680195
Target:  5'- aCGUcGGCGCcACCcGCACccgcgugcacggcGGCCGGGu -3'
miRNA:   3'- cGCGaCCGCGcUGGcCGUG-------------UCGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.