miRNA display CGI


Results 1 - 20 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11002 5' -63.3 NC_002794.1 + 100315 0.82 0.076651
Target:  5'- cCGCUGGCacgcGCGGCCGGCGCAcgGCCGGc -3'
miRNA:   3'- cGCGACCG----CGCUGGCCGUGU--CGGCCc -5'
11002 5' -63.3 NC_002794.1 + 185176 0.81 0.098119
Target:  5'- gGCGC-GGCGCGGUCGGCGCGGUCGGc -3'
miRNA:   3'- -CGCGaCCGCGCUGGCCGUGUCGGCCc -5'
11002 5' -63.3 NC_002794.1 + 93987 0.8 0.105598
Target:  5'- cGCGCUcGGCGCGgacGCCGGCGCcggcggcgGGCCGGcGg -3'
miRNA:   3'- -CGCGA-CCGCGC---UGGCCGUG--------UCGGCC-C- -5'
11002 5' -63.3 NC_002794.1 + 112099 0.79 0.119265
Target:  5'- uGCGCguccaGGCGCGGCCGGgacgACGGCgCGGGg -3'
miRNA:   3'- -CGCGa----CCGCGCUGGCCg---UGUCG-GCCC- -5'
11002 5' -63.3 NC_002794.1 + 195611 0.79 0.131365
Target:  5'- cGCGCUGGCGU--CCGGCccaaACGGCCGGc -3'
miRNA:   3'- -CGCGACCGCGcuGGCCG----UGUCGGCCc -5'
11002 5' -63.3 NC_002794.1 + 111752 0.78 0.14459
Target:  5'- -aGCUGGCGCcGCgCGGCGCcGUCGGGg -3'
miRNA:   3'- cgCGACCGCGcUG-GCCGUGuCGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 98928 0.78 0.151649
Target:  5'- cGgGCUgGGCGCGGCCGGgaaGgGGCUGGGg -3'
miRNA:   3'- -CgCGA-CCGCGCUGGCCg--UgUCGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 107002 0.77 0.162825
Target:  5'- gGCGCUGGCcgacGCGACggugcucaccgCGGCGCcGCUGGGg -3'
miRNA:   3'- -CGCGACCG----CGCUG-----------GCCGUGuCGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 19527 0.77 0.174737
Target:  5'- aGCGCcGGCGCGGCgCGGC-CcGCCGGu -3'
miRNA:   3'- -CGCGaCCGCGCUG-GCCGuGuCGGCCc -5'
11002 5' -63.3 NC_002794.1 + 143397 0.77 0.178877
Target:  5'- -aGCUGcuGCuCGACCGGCGCGgGCCGGGc -3'
miRNA:   3'- cgCGAC--CGcGCUGGCCGUGU-CGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 101566 0.76 0.183104
Target:  5'- aCGCcGGCGgGaguGCCGGCcgccGCGGCCGGGg -3'
miRNA:   3'- cGCGaCCGCgC---UGGCCG----UGUCGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 121966 0.76 0.200904
Target:  5'- aGCGCUccGUGCGgcucggucccGCCGaGCGCGGCCGGGa -3'
miRNA:   3'- -CGCGAc-CGCGC----------UGGC-CGUGUCGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 86015 0.76 0.207481
Target:  5'- cCGCUGGCGcCGACCGuGCGgCggacaggccucaucgGGCCGGGu -3'
miRNA:   3'- cGCGACCGC-GCUGGC-CGU-G---------------UCGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 32579 0.75 0.210357
Target:  5'- cGCGCggcGGUGCcggGGCCGGgGCcggGGCCGGGg -3'
miRNA:   3'- -CGCGa--CCGCG---CUGGCCgUG---UCGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 182545 0.75 0.210357
Target:  5'- aGCGaCUGcGcCGCGGCCGGCACcgucaCCGGGa -3'
miRNA:   3'- -CGC-GAC-C-GCGCUGGCCGUGuc---GGCCC- -5'
11002 5' -63.3 NC_002794.1 + 94277 0.75 0.214734
Target:  5'- uGCGC-GGCGCGGCCcgagcggGGgGCGGCuCGGGc -3'
miRNA:   3'- -CGCGaCCGCGCUGG-------CCgUGUCG-GCCC- -5'
11002 5' -63.3 NC_002794.1 + 107887 0.75 0.22019
Target:  5'- gGCGC-GGCGgGugCGGCu--GCCGGGu -3'
miRNA:   3'- -CGCGaCCGCgCugGCCGuguCGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 34757 0.75 0.22019
Target:  5'- gGCGC-GGUGgGACgCGGCACGGCCGc- -3'
miRNA:   3'- -CGCGaCCGCgCUG-GCCGUGUCGGCcc -5'
11002 5' -63.3 NC_002794.1 + 58647 0.75 0.230413
Target:  5'- cGCaGCUGG-GCGACgGGCugcuGCAGCCGGc -3'
miRNA:   3'- -CG-CGACCgCGCUGgCCG----UGUCGGCCc -5'
11002 5' -63.3 NC_002794.1 + 187460 0.75 0.235673
Target:  5'- cCGCUcGGCGUcGCuCGGCGCGcGCCGGGc -3'
miRNA:   3'- cGCGA-CCGCGcUG-GCCGUGU-CGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.