miRNA display CGI


Results 21 - 40 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11002 5' -63.3 NC_002794.1 + 147228 0.75 0.235673
Target:  5'- gGCGUUGGCGCGAUgGGCccgagaGCAcuCCGGGc -3'
miRNA:   3'- -CGCGACCGCGCUGgCCG------UGUc-GGCCC- -5'
11002 5' -63.3 NC_002794.1 + 187460 0.75 0.235673
Target:  5'- cCGCUcGGCGUcGCuCGGCGCGcGCCGGGc -3'
miRNA:   3'- cGCGA-CCGCGcUG-GCCGUGU-CGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 107066 0.75 0.240493
Target:  5'- gGCGC-GGCGCcGCCGGCAUgucggagccgacgGGCgGGGg -3'
miRNA:   3'- -CGCGaCCGCGcUGGCCGUG-------------UCGgCCC- -5'
11002 5' -63.3 NC_002794.1 + 181539 0.74 0.246495
Target:  5'- cCGCcGGCG-GGCCGGCGCucucggucGCCGGGc -3'
miRNA:   3'- cGCGaCCGCgCUGGCCGUGu-------CGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 47946 0.74 0.252059
Target:  5'- gGCGCc-GCGCGucCCGGCGcCGGCUGGGc -3'
miRNA:   3'- -CGCGacCGCGCu-GGCCGU-GUCGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 9335 0.74 0.252059
Target:  5'- aCGCgGGUGCGugcGCCGGCACgacggucgaaGGUCGGGg -3'
miRNA:   3'- cGCGaCCGCGC---UGGCCGUG----------UCGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 95760 0.74 0.252059
Target:  5'- uCGCggGGCgGCGGCCGcGacgGCGGCCGGGg -3'
miRNA:   3'- cGCGa-CCG-CGCUGGC-Cg--UGUCGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 87029 0.74 0.269371
Target:  5'- cCGCaGGauccgGgGACCGGCGCGGCuCGGGg -3'
miRNA:   3'- cGCGaCCg----CgCUGGCCGUGUCG-GCCC- -5'
11002 5' -63.3 NC_002794.1 + 186276 0.74 0.274749
Target:  5'- cGC-CUGGCGCGGCggcaccgCGGCcagGCGGCCGGu -3'
miRNA:   3'- -CGcGACCGCGCUG-------GCCG---UGUCGGCCc -5'
11002 5' -63.3 NC_002794.1 + 13073 0.74 0.275352
Target:  5'- gGgGCc-GCGCGACCGGCGCGaagucCCGGGg -3'
miRNA:   3'- -CgCGacCGCGCUGGCCGUGUc----GGCCC- -5'
11002 5' -63.3 NC_002794.1 + 80490 0.74 0.275352
Target:  5'- -aGCUGGCGCaccACCGGCACGucuucugcGCCGcGGc -3'
miRNA:   3'- cgCGACCGCGc--UGGCCGUGU--------CGGC-CC- -5'
11002 5' -63.3 NC_002794.1 + 116081 0.74 0.275352
Target:  5'- aGCGCUcGGCGCGG-CGGUcgucGCCGGGg -3'
miRNA:   3'- -CGCGA-CCGCGCUgGCCGugu-CGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 191890 0.74 0.275352
Target:  5'- gGCGgaGGCGgGAUCGGCACcgGGaCCGGc -3'
miRNA:   3'- -CGCgaCCGCgCUGGCCGUG--UC-GGCCc -5'
11002 5' -63.3 NC_002794.1 + 38419 0.74 0.277773
Target:  5'- aGCGCUcgccgacuccauggcGGCGgGccggacugaggaGCCGGCGCGGCCGcGGc -3'
miRNA:   3'- -CGCGA---------------CCGCgC------------UGGCCGUGUCGGC-CC- -5'
11002 5' -63.3 NC_002794.1 + 148445 0.73 0.281438
Target:  5'- -gGCUGGCGCucuACUGGCcuccGCGGCaCGGGg -3'
miRNA:   3'- cgCGACCGCGc--UGGCCG----UGUCG-GCCC- -5'
11002 5' -63.3 NC_002794.1 + 186851 0.73 0.281438
Target:  5'- cGCGCgGGCGCuGCCGuGCAgCAGCagCGGGc -3'
miRNA:   3'- -CGCGaCCGCGcUGGC-CGU-GUCG--GCCC- -5'
11002 5' -63.3 NC_002794.1 + 110450 0.73 0.28763
Target:  5'- gGCGgaGGCcgGCGAgCCGGCucguCGGCuCGGGg -3'
miRNA:   3'- -CGCgaCCG--CGCU-GGCCGu---GUCG-GCCC- -5'
11002 5' -63.3 NC_002794.1 + 44718 0.73 0.293929
Target:  5'- cCGC-GGCGacguCGGCCGGCGCcGCCGGa -3'
miRNA:   3'- cGCGaCCGC----GCUGGCCGUGuCGGCCc -5'
11002 5' -63.3 NC_002794.1 + 50589 0.73 0.300335
Target:  5'- gGCgGCUGG-GUGGCCGGC---GCCGGGg -3'
miRNA:   3'- -CG-CGACCgCGCUGGCCGuguCGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 134005 0.73 0.300335
Target:  5'- uCGCcgGGUGCGAgCGcuGCACGGUCGGGu -3'
miRNA:   3'- cGCGa-CCGCGCUgGC--CGUGUCGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.