miRNA display CGI


Results 21 - 40 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11002 5' -63.3 NC_002794.1 + 183432 0.66 0.6717
Target:  5'- aGCGg-GaGCGgGACCGGCGCccgccaccGCCGGc -3'
miRNA:   3'- -CGCgaC-CGCgCUGGCCGUGu-------CGGCCc -5'
11002 5' -63.3 NC_002794.1 + 180659 0.66 0.6717
Target:  5'- aGCGCagGGCGUG-CCGGggaACucGCCGGc -3'
miRNA:   3'- -CGCGa-CCGCGCuGGCCg--UGu-CGGCCc -5'
11002 5' -63.3 NC_002794.1 + 24812 0.66 0.6717
Target:  5'- cCGUcGGCGCGACCGaCgACGGgucaCGGGg -3'
miRNA:   3'- cGCGaCCGCGCUGGCcG-UGUCg---GCCC- -5'
11002 5' -63.3 NC_002794.1 + 143724 0.66 0.6717
Target:  5'- -gGCgGGCGuCGuccucgcccGCCGGaCGCGccGCCGGGg -3'
miRNA:   3'- cgCGaCCGC-GC---------UGGCC-GUGU--CGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 120067 0.66 0.6717
Target:  5'- cGCGgaGGC-CGACgCGGCGguGgCGGc -3'
miRNA:   3'- -CGCgaCCGcGCUG-GCCGUguCgGCCc -5'
11002 5' -63.3 NC_002794.1 + 184456 0.66 0.670754
Target:  5'- cCGCUGccgcccgcgggccGCGCGAaCGGCGC-GCgGGGc -3'
miRNA:   3'- cGCGAC-------------CGCGCUgGCCGUGuCGgCCC- -5'
11002 5' -63.3 NC_002794.1 + 56318 0.66 0.670754
Target:  5'- uCGCUGGCggccGUGGCCGGCgacgcggcgaagaGCAGCuCGa- -3'
miRNA:   3'- cGCGACCG----CGCUGGCCG-------------UGUCG-GCcc -5'
11002 5' -63.3 NC_002794.1 + 138577 0.66 0.670754
Target:  5'- uCGCUcgaucgaGGCGCG-UCGGCGCGG-CGGa -3'
miRNA:   3'- cGCGA-------CCGCGCuGGCCGUGUCgGCCc -5'
11002 5' -63.3 NC_002794.1 + 141597 0.66 0.670754
Target:  5'- cGCGUcgccgGGCggcucgGCGACCGGCucGCGGUcuagcgaCGGGa -3'
miRNA:   3'- -CGCGa----CCG------CGCUGGCCG--UGUCG-------GCCC- -5'
11002 5' -63.3 NC_002794.1 + 12544 0.66 0.670754
Target:  5'- aCGC-GGCGCGcacggcuACCGGCGCAucGCCa-- -3'
miRNA:   3'- cGCGaCCGCGC-------UGGCCGUGU--CGGccc -5'
11002 5' -63.3 NC_002794.1 + 50810 0.66 0.662234
Target:  5'- gGCGUcgGGCGCu-CCGGCGCccccGCCcucGGGc -3'
miRNA:   3'- -CGCGa-CCGCGcuGGCCGUGu---CGG---CCC- -5'
11002 5' -63.3 NC_002794.1 + 142200 0.66 0.662234
Target:  5'- aGUGCgggaagcGGCgGCGGCagCGGCGguGCgGGGa -3'
miRNA:   3'- -CGCGa------CCG-CGCUG--GCCGUguCGgCCC- -5'
11002 5' -63.3 NC_002794.1 + 60642 0.66 0.662234
Target:  5'- gGCGCcGGCgGCG-CCGGC-CAcCCGGc -3'
miRNA:   3'- -CGCGaCCG-CGCuGGCCGuGUcGGCCc -5'
11002 5' -63.3 NC_002794.1 + 96742 0.66 0.662234
Target:  5'- cCGCcGGCGCGuCUcGCaaGCGGCCGGcGg -3'
miRNA:   3'- cGCGaCCGCGCuGGcCG--UGUCGGCC-C- -5'
11002 5' -63.3 NC_002794.1 + 124256 0.66 0.662234
Target:  5'- cGCGCgGGUaGUcGCCGGC-CAGCCGc- -3'
miRNA:   3'- -CGCGaCCG-CGcUGGCCGuGUCGGCcc -5'
11002 5' -63.3 NC_002794.1 + 74373 0.66 0.656545
Target:  5'- cGUGCUucgGGgGCGGCCGGCGCGacuacacgaccgagcGCCu-- -3'
miRNA:   3'- -CGCGA---CCgCGCUGGCCGUGU---------------CGGccc -5'
11002 5' -63.3 NC_002794.1 + 141946 0.66 0.652748
Target:  5'- ----cGGCgGCGACCcGUuggACGGCCGGGa -3'
miRNA:   3'- cgcgaCCG-CGCUGGcCG---UGUCGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 60086 0.66 0.652748
Target:  5'- cGCGCaGGUGCucCaCGGC-CAGCUGGc -3'
miRNA:   3'- -CGCGaCCGCGcuG-GCCGuGUCGGCCc -5'
11002 5' -63.3 NC_002794.1 + 120109 0.66 0.652748
Target:  5'- cGCGCcGcGCGUGACgCGcGCgACGGCgacCGGGg -3'
miRNA:   3'- -CGCGaC-CGCGCUG-GC-CG-UGUCG---GCCC- -5'
11002 5' -63.3 NC_002794.1 + 100745 0.66 0.652748
Target:  5'- cGCGCgGaGCGCGucuaucGCUGGC-CGGUCGcGGa -3'
miRNA:   3'- -CGCGaC-CGCGC------UGGCCGuGUCGGC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.