miRNA display CGI


Results 41 - 60 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11002 5' -63.3 NC_002794.1 + 60086 0.66 0.652748
Target:  5'- cGCGCaGGUGCucCaCGGC-CAGCUGGc -3'
miRNA:   3'- -CGCGaCCGCGcuG-GCCGuGUCGGCCc -5'
11002 5' -63.3 NC_002794.1 + 141946 0.66 0.652748
Target:  5'- ----cGGCgGCGACCcGUuggACGGCCGGGa -3'
miRNA:   3'- cgcgaCCG-CGCUGGcCG---UGUCGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 94450 0.66 0.652748
Target:  5'- gGCGCggaggagucggUGGCGaCGGCaacggcggcggCGGaCGCGGCCGcGGg -3'
miRNA:   3'- -CGCG-----------ACCGC-GCUG-----------GCC-GUGUCGGC-CC- -5'
11002 5' -63.3 NC_002794.1 + 78312 0.66 0.651798
Target:  5'- -gGCUcucgcccucucccGGCGCGACgGGCGgAggcGCCGGa -3'
miRNA:   3'- cgCGA-------------CCGCGCUGgCCGUgU---CGGCCc -5'
11002 5' -63.3 NC_002794.1 + 36988 0.66 0.651798
Target:  5'- cGCGCaGGUcgGCGAggcggacCCGGUagaGCGGCuCGGGc -3'
miRNA:   3'- -CGCGaCCG--CGCU-------GGCCG---UGUCG-GCCC- -5'
11002 5' -63.3 NC_002794.1 + 58566 0.66 0.651798
Target:  5'- cGCGCU-GCGCGAacgccuacuuccaCCaGCGCGGCgGGc -3'
miRNA:   3'- -CGCGAcCGCGCU-------------GGcCGUGUCGgCCc -5'
11002 5' -63.3 NC_002794.1 + 154376 0.66 0.649899
Target:  5'- cCGC-GGCgGCGGCgGGCACGcccguucgcgugguGCCGGu -3'
miRNA:   3'- cGCGaCCG-CGCUGgCCGUGU--------------CGGCCc -5'
11002 5' -63.3 NC_002794.1 + 111616 0.66 0.643248
Target:  5'- -gGCcGGCGgGGCCGcCGCGGCCGc- -3'
miRNA:   3'- cgCGaCCGCgCUGGCcGUGUCGGCcc -5'
11002 5' -63.3 NC_002794.1 + 70744 0.66 0.643248
Target:  5'- -aGCa-GCGCGAgcCCGGgaaACAGCUGGGa -3'
miRNA:   3'- cgCGacCGCGCU--GGCCg--UGUCGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 55209 0.66 0.643248
Target:  5'- gGCGC-GGCGgaGGCCGGCGgucgAGCCGa- -3'
miRNA:   3'- -CGCGaCCGCg-CUGGCCGUg---UCGGCcc -5'
11002 5' -63.3 NC_002794.1 + 54688 0.66 0.643248
Target:  5'- aCGCUGaGCGCGuacagaaacuCCaGGUACgAGCCGcGGa -3'
miRNA:   3'- cGCGAC-CGCGCu---------GG-CCGUG-UCGGC-CC- -5'
11002 5' -63.3 NC_002794.1 + 105661 0.66 0.643248
Target:  5'- cCGC-GGCGCGcuccgcCCGG-ACcGCCGGGa -3'
miRNA:   3'- cGCGaCCGCGCu-----GGCCgUGuCGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 55900 0.66 0.642297
Target:  5'- gGCGUUGGUGCagucgucGAUCucgGGCACGGUCaGGa -3'
miRNA:   3'- -CGCGACCGCG-------CUGG---CCGUGUCGGcCC- -5'
11002 5' -63.3 NC_002794.1 + 107231 0.67 0.637543
Target:  5'- cGCGCgacgGGgGCGGcgucgcggaccuggcCCGGCGgAGCCGc- -3'
miRNA:   3'- -CGCGa---CCgCGCU---------------GGCCGUgUCGGCcc -5'
11002 5' -63.3 NC_002794.1 + 11531 0.67 0.63374
Target:  5'- -aGCUGcGgGCGACCGaggacCGCGGCUGGu -3'
miRNA:   3'- cgCGAC-CgCGCUGGCc----GUGUCGGCCc -5'
11002 5' -63.3 NC_002794.1 + 151640 0.67 0.63374
Target:  5'- -gGCUcGcCGcCGGCCGGCACuuggcucgccGCCGGGu -3'
miRNA:   3'- cgCGAcC-GC-GCUGGCCGUGu---------CGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 146907 0.67 0.63374
Target:  5'- gGCGCUcgGGCGCGGggaUCGGC-CGGaCGGa -3'
miRNA:   3'- -CGCGA--CCGCGCU---GGCCGuGUCgGCCc -5'
11002 5' -63.3 NC_002794.1 + 124390 0.67 0.63374
Target:  5'- uCGCggcGGCGCGucGCCGGUc--GUCGGGg -3'
miRNA:   3'- cGCGa--CCGCGC--UGGCCGuguCGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 137668 0.67 0.63374
Target:  5'- cCGCUGGUGCGGacgcaCGGUcCAGuuGaGGc -3'
miRNA:   3'- cGCGACCGCGCUg----GCCGuGUCggC-CC- -5'
11002 5' -63.3 NC_002794.1 + 55629 0.67 0.63374
Target:  5'- aCGCUGGCcagcacGCgGGCCGGCaggcGCAGCCc-- -3'
miRNA:   3'- cGCGACCG------CG-CUGGCCG----UGUCGGccc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.