miRNA display CGI


Results 1 - 20 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11002 5' -63.3 NC_002794.1 + 270 0.69 0.512147
Target:  5'- cGCGC-GGaCGCGAggacggcggccCUGGCGCGccgaacGCCGGGc -3'
miRNA:   3'- -CGCGaCC-GCGCU-----------GGCCGUGU------CGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 2479 0.72 0.333977
Target:  5'- cGCGCgagGGCGau-CCGGU--GGCCGGGg -3'
miRNA:   3'- -CGCGa--CCGCgcuGGCCGugUCGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 3747 0.66 0.6999
Target:  5'- cCGCaacGCGCGuCaCGGCGgGGCgGGGg -3'
miRNA:   3'- cGCGac-CGCGCuG-GCCGUgUCGgCCC- -5'
11002 5' -63.3 NC_002794.1 + 3845 0.68 0.530377
Target:  5'- gGCGg-GGCuugaGCcccgGACCGGCAUauaAGCCGGGu -3'
miRNA:   3'- -CGCgaCCG----CG----CUGGCCGUG---UCGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 9335 0.74 0.252059
Target:  5'- aCGCgGGUGCGugcGCCGGCACgacggucgaaGGUCGGGg -3'
miRNA:   3'- cGCGaCCGCGC---UGGCCGUG----------UCGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 11531 0.67 0.63374
Target:  5'- -aGCUGcGgGCGACCGaggacCGCGGCUGGu -3'
miRNA:   3'- cgCGAC-CgCGCUGGCc----GUGUCGGCCc -5'
11002 5' -63.3 NC_002794.1 + 12544 0.66 0.670754
Target:  5'- aCGC-GGCGCGcacggcuACCGGCGCAucGCCa-- -3'
miRNA:   3'- cGCGaCCGCGC-------UGGCCGUGU--CGGccc -5'
11002 5' -63.3 NC_002794.1 + 13073 0.74 0.275352
Target:  5'- gGgGCc-GCGCGACCGGCGCGaagucCCGGGg -3'
miRNA:   3'- -CgCGacCGCGCUGGCCGUGUc----GGCCC- -5'
11002 5' -63.3 NC_002794.1 + 14603 0.68 0.576883
Target:  5'- aGCGCgccgGGCaccGCGACgGGgccggagaCGgGGCCGGGc -3'
miRNA:   3'- -CGCGa---CCG---CGCUGgCC--------GUgUCGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 16301 0.68 0.543277
Target:  5'- aGC-CUGGCggccGCGGCCGGCugGaucccccugccccugGCCGGc -3'
miRNA:   3'- -CGcGACCG----CGCUGGCCGugU---------------CGGCCc -5'
11002 5' -63.3 NC_002794.1 + 16353 0.66 0.680195
Target:  5'- aCGUcGGCGCcACCcGCACccgcgugcacggcGGCCGGGu -3'
miRNA:   3'- cGCGaCCGCGcUGGcCGUG-------------UCGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 19326 0.69 0.476509
Target:  5'- cGCGCUGGC--GACCcGCGC-GCCGGu -3'
miRNA:   3'- -CGCGACCGcgCUGGcCGUGuCGGCCc -5'
11002 5' -63.3 NC_002794.1 + 19527 0.77 0.174737
Target:  5'- aGCGCcGGCGCGGCgCGGC-CcGCCGGu -3'
miRNA:   3'- -CGCGaCCGCGCUG-GCCGuGuCGGCCc -5'
11002 5' -63.3 NC_002794.1 + 20394 0.66 0.690539
Target:  5'- gGUGC-GGCGgGACCGGg--AGCgGGGc -3'
miRNA:   3'- -CGCGaCCGCgCUGGCCgugUCGgCCC- -5'
11002 5' -63.3 NC_002794.1 + 22580 0.72 0.320197
Target:  5'- cCGCUGuccaaguCGCGcUCGGCACGGUCGGGa -3'
miRNA:   3'- cGCGACc------GCGCuGGCCGUGUCGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 22716 0.66 0.652748
Target:  5'- aCGC-GGCGCcgagaGCCGGCgaACGGUCGGu -3'
miRNA:   3'- cGCGaCCGCGc----UGGCCG--UGUCGGCCc -5'
11002 5' -63.3 NC_002794.1 + 24812 0.66 0.6717
Target:  5'- cCGUcGGCGCGACCGaCgACGGgucaCGGGg -3'
miRNA:   3'- cGCGaCCGCGCUGGCcG-UGUCg---GCCC- -5'
11002 5' -63.3 NC_002794.1 + 26641 0.72 0.362821
Target:  5'- cGCGCacccGGacgGCGGCCGGCucguCGGCgGGGu -3'
miRNA:   3'- -CGCGa---CCg--CGCUGGCCGu---GUCGgCCC- -5'
11002 5' -63.3 NC_002794.1 + 30743 0.7 0.450606
Target:  5'- --aCUGGcCGCGGCUGGCGC-GCUGGa -3'
miRNA:   3'- cgcGACC-GCGCUGGCCGUGuCGGCCc -5'
11002 5' -63.3 NC_002794.1 + 32255 0.68 0.539581
Target:  5'- aGCuGCUGGCGCucgaCGGC-CGGCCGa- -3'
miRNA:   3'- -CG-CGACCGCGcug-GCCGuGUCGGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.