miRNA display CGI


Results 21 - 40 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11002 5' -63.3 NC_002794.1 + 32304 0.72 0.348186
Target:  5'- cCGCggcGGcCGCG-CCGGcCGCGGCCGGa -3'
miRNA:   3'- cGCGa--CC-GCGCuGGCC-GUGUCGGCCc -5'
11002 5' -63.3 NC_002794.1 + 32579 0.75 0.210357
Target:  5'- cGCGCggcGGUGCcggGGCCGGgGCcggGGCCGGGg -3'
miRNA:   3'- -CGCGa--CCGCG---CUGGCCgUG---UCGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 34260 0.69 0.485307
Target:  5'- cCGCaGGCG-GACCGcGCGCAGgCGGc -3'
miRNA:   3'- cGCGaCCGCgCUGGC-CGUGUCgGCCc -5'
11002 5' -63.3 NC_002794.1 + 34757 0.75 0.22019
Target:  5'- gGCGC-GGUGgGACgCGGCACGGCCGc- -3'
miRNA:   3'- -CGCGaCCGCgCUG-GCCGUGUCGGCcc -5'
11002 5' -63.3 NC_002794.1 + 36988 0.66 0.651798
Target:  5'- cGCGCaGGUcgGCGAggcggacCCGGUagaGCGGCuCGGGc -3'
miRNA:   3'- -CGCGaCCG--CGCU-------GGCCG---UGUCG-GCCC- -5'
11002 5' -63.3 NC_002794.1 + 37272 0.66 0.691477
Target:  5'- -gGCgGGCGCG-CgGGCGCGGCguacaacgacacguaGGGg -3'
miRNA:   3'- cgCGaCCGCGCuGgCCGUGUCGg--------------CCC- -5'
11002 5' -63.3 NC_002794.1 + 37734 0.68 0.539581
Target:  5'- aGCgGC-GGCGCcGCCGGCGgCGGCgCGGcGg -3'
miRNA:   3'- -CG-CGaCCGCGcUGGCCGU-GUCG-GCC-C- -5'
11002 5' -63.3 NC_002794.1 + 37763 0.66 0.690539
Target:  5'- gGCGCcGGCGgGAgCGGCcgucgucguCGGCCGcaGGc -3'
miRNA:   3'- -CGCGaCCGCgCUgGCCGu--------GUCGGC--CC- -5'
11002 5' -63.3 NC_002794.1 + 37893 0.66 0.681137
Target:  5'- gGCGgUGGCgGCGGCagCGGCuc-GCCGGc -3'
miRNA:   3'- -CGCgACCG-CGCUG--GCCGuguCGGCCc -5'
11002 5' -63.3 NC_002794.1 + 37961 0.67 0.60903
Target:  5'- uCGCUcGGCGgcucgugguacgagcCGAUCGcGguCAGCCGGGc -3'
miRNA:   3'- cGCGA-CCGC---------------GCUGGC-CguGUCGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 38096 0.71 0.392566
Target:  5'- aGCGCgaccGGCGUGaagacgcgggagaGCCGcGC-CAGCUGGGg -3'
miRNA:   3'- -CGCGa---CCGCGC-------------UGGC-CGuGUCGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 38419 0.74 0.277773
Target:  5'- aGCGCUcgccgacuccauggcGGCGgGccggacugaggaGCCGGCGCGGCCGcGGc -3'
miRNA:   3'- -CGCGA---------------CCGCgC------------UGGCCGUGUCGGC-CC- -5'
11002 5' -63.3 NC_002794.1 + 39678 0.7 0.440463
Target:  5'- cGCGC-GGUGCGcuucuucgucgcCCGGCACcGCCGGc -3'
miRNA:   3'- -CGCGaCCGCGCu-----------GGCCGUGuCGGCCc -5'
11002 5' -63.3 NC_002794.1 + 41207 0.66 0.681137
Target:  5'- gGCGCUGcUGCcACCGGC-Cu-CCGGGg -3'
miRNA:   3'- -CGCGACcGCGcUGGCCGuGucGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 42456 0.67 0.624231
Target:  5'- cGCGUuccaUGGCGuCGuCCaugucGCGCGcGCCGGGg -3'
miRNA:   3'- -CGCG----ACCGC-GCuGGc----CGUGU-CGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 42572 0.67 0.621379
Target:  5'- cCGC-GGCG-GACCcgcggacggaggagGGCgcgGCGGCCGGGa -3'
miRNA:   3'- cGCGaCCGCgCUGG--------------CCG---UGUCGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 42643 0.66 0.681137
Target:  5'- aGCGgaGuCGCGGCCgaagccgacGGCGCcGCCGGc -3'
miRNA:   3'- -CGCgaCcGCGCUGG---------CCGUGuCGGCCc -5'
11002 5' -63.3 NC_002794.1 + 43234 0.69 0.476509
Target:  5'- uGCGCUGcaGCGgcacCGGCCGGaAC-GCCGGGu -3'
miRNA:   3'- -CGCGAC--CGC----GCUGGCCgUGuCGGCCC- -5'
11002 5' -63.3 NC_002794.1 + 44007 0.69 0.512147
Target:  5'- -aGCacGGCGCGGCCGGCguccGCAGaCCGu- -3'
miRNA:   3'- cgCGa-CCGCGCUGGCCG----UGUC-GGCcc -5'
11002 5' -63.3 NC_002794.1 + 44164 0.69 0.497752
Target:  5'- cGUGCacGGCGCGAgCGGCGgcuCgucgacuccgggcgaAGCCGGGc -3'
miRNA:   3'- -CGCGa-CCGCGCUgGCCGU---G---------------UCGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.